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Hi,
This is related to #88 , I think there is still an issue with identity emissions.
When I set emissions="studentst_id" or "gaussian_id", the initialization works fine, but I encounter the error below during model fitting.
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-50-77c812f71179> in <module>
1 q_elbos_lem, q_lem = rslds.fit(y, method="laplace_em",
2 variational_posterior="structured_meanfield",
----> 3 initialize=False, num_iters=100, alpha=0.5)
~/.local/lib/python3.7/site-packages/ssm/util.py in wrapper(self, datas, inputs, masks, tags, **kwargs)
107 tags = [tags]
108
--> 109 return f(self, datas, inputs=inputs, masks=masks, tags=tags, **kwargs)
110
111 return wrapper
~/.local/lib/python3.7/site-packages/ssm/lds.py in fit(self, datas, inputs, masks, tags, method, variational_posterior, initialize, **kwargs)
853 # Initialize the variational posterior
854 posterior = self._make_variational_posterior(variational_posterior, datas, inputs, masks, tags, method)
--> 855 elbos = _fitting_methods[method](posterior, datas, inputs, masks, tags, learning=True, **kwargs)
856 return elbos, posterior
857
~/.local/lib/python3.7/site-packages/ssm/lds.py in _fit_laplace_em(self, variational_posterior, datas, inputs, masks, tags, num_iters, num_samples, continuous_optimizer, continuous_tolerance, continuous_maxiter, emission_optimizer, emission_optimizer_maxiter, parameters_update, alpha, learning)
730 Assume q(z) is a chain-structured discrete graphical model.
731 """
--> 732 elbos = [self._laplace_em_elbo(variational_posterior, datas, inputs, masks, tags)]
733 pbar = trange(num_iters)
734 pbar.set_description("ELBO: {:.1f}".format(elbos[-1]))
~/.local/lib/python3.7/site-packages/ssm/lds.py in _laplace_em_elbo(self, variational_posterior, datas, inputs, masks, tags)
699 log_Ps = self.transitions.log_transition_matrices(x, input, x_mask, tag)
700 log_likes = self.dynamics.log_likelihoods(x, input, x_mask, tag)
--> 701 log_likes += self.emissions.log_likelihoods(data, input, mask, tag, x)
702
703 # Compute the expected log probability
~/.local/lib/python3.7/site-packages/ssm/emissions.py in log_likelihoods(self, data, input, mask, tag, x)
448 def log_likelihoods(self, data, input, mask, tag, x):
449 N, etas, nus = self.N, np.exp(self.inv_etas), np.exp(self.inv_nus)
--> 450 mus = self.forward(x, input, tag)
451
452 resid = data[:, None, :] - mus
TypeError: forward() takes 3 positional arguments but 4 were givenI also experience the same error as in #88 under these conditions. I'm not sure why this error keeps happening, given that it was updated in #88 . Does anyone have any ideas?
---------------------------------------------------------------------------
NotImplementedError Traceback (most recent call last)
<ipython-input-51-b963545280d0> in <module>
1 q_elbos_lem, q_lem = rslds.fit(y, method="bbvi",
2 variational_posterior="meanfield",
----> 3 initialize=False, num_iters=100, alpha=0.5)
~/.local/lib/python3.7/site-packages/ssm/util.py in wrapper(self, datas, inputs, masks, tags, **kwargs)
107 tags = [tags]
108
--> 109 return f(self, datas, inputs=inputs, masks=masks, tags=tags, **kwargs)
110
111 return wrapper
~/.local/lib/python3.7/site-packages/ssm/lds.py in fit(self, datas, inputs, masks, tags, method, variational_posterior, initialize, **kwargs)
853 # Initialize the variational posterior
854 posterior = self._make_variational_posterior(variational_posterior, datas, inputs, masks, tags, method)
--> 855 elbos = _fitting_methods[method](posterior, datas, inputs, masks, tags, learning=True, **kwargs)
856 return elbos, posterior
857
~/.local/lib/python3.7/site-packages/ssm/lds.py in _fit_svi(self, variational_posterior, datas, inputs, masks, tags, learning, optimizer, num_iters, **kwargs)
414 # Initialize the parameters
415 if learning:
--> 416 params = (self.params, variational_posterior.params)
417 else:
418 params = variational_posterior.params
~/.local/lib/python3.7/site-packages/ssm/lds.py in params(self)
157 self.transitions.params, \
158 self.dynamics.params, \
--> 159 self.emissions.params
160
161 @params.setter
~/.local/lib/python3.7/site-packages/ssm/emissions.py in params(self)
434 @property
435 def params(self):
--> 436 return super(_StudentsTEmissionsMixin, self).params + (self.inv_etas, self.inv_nus)
437
438 @params.setter
~/.local/lib/python3.7/site-packages/ssm/emissions.py in params(self)
20 @property
21 def params(self):
---> 22 raise NotImplementedError
23
24 @params.setter
NotImplementedError: Reactions are currently unavailable
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