CHANGELOG.md

0.11.4 (Tue Nov 19 2024)

🐛 Bug Fix

• Update README to redirect to DANDI CLI #67 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

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0.11.3 (Fri Nov 15 2024)

🐛 Bug Fix

• Trivial change to release new version #65 ([email protected] @aaronkanzer)
• Bump dandischema to 0.10.4 #64 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.11.2 (Mon Aug 26 2024)

🐛 Bug Fix

• Include reference to appropriate docker test container #62 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.11.1 (Wed Aug 07 2024)

🐛 Bug Fix

• Update lincbrain --preserve-tree flag from upstream dandi, resolve etelemetry error #60 (@jwodder @yarikoptic [email protected] @aaronkanzer)

Authors: 4

• @aaronkanzer
• Aaron Kanzer ([email protected])
• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

---

0.11.0 (Fri Aug 02 2024)

🚀 Enhancement

• trivial change to invoke deployment of 0.11.0 #56 ([email protected] @aaronkanzer)

🐛 Bug Fix

• Merge updates for zarr completion & doi completion upstream in dandi cli #55 (@jwodder @yarikoptic [email protected] @mvandenburgh @rly @jjnesbitt @asmacdo @candleindark [email protected] @aaronkanzer)
• Edit and deploy readthedocs for LINC CLI #54 ([email protected] @aaronkanzer)
• Replace Netlify staging url with staging.lincbrain.org url in CLI #53 ([email protected] @aaronkanzer)

Authors: 10

• @aaronkanzer
• Aaron Kanzer ([email protected])
• Austin Macdonald (@asmacdo)
• DANDI Bot ([email protected])
• Isaac To (@candleindark)
• Jacob Nesbitt (@jjnesbitt)
• John T. Wodder II (@jwodder)
• Mike VanDenburgh (@mvandenburgh)
• Ryan Ly (@rly)
• Yaroslav Halchenko (@yarikoptic)

---

0.10.0 (Fri Jul 19 2024)

🚀 Enhancement

• Update readme #50 (@kabilar)
• Attempt to resolve versioneer compatibility issues #51 ([email protected] @aaronkanzer)

🐛 Bug Fix

• Update readme links and fix spelling #46 (@kabilar)
• Pin dandischema to 0.10.1 to resolve API /info schema version match #49 ([email protected] @aaronkanzer)
• Include logic to properly authenticate a user upon the move command, pin dandischema to 0.10.0 #42 ([email protected] @aaronkanzer)

Authors: 3

• @aaronkanzer
• Aaron Kanzer ([email protected])
• Kabilar Gunalan (@kabilar)

---

0.9.0 (Wed Mar 13 2024)

🚀 Enhancement

• Include new token for PyPI push #40 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.8.0 (Wed Mar 13 2024)

🚀 Enhancement

• Refresh permissions on pypi #39 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.7.0 (Wed Mar 13 2024)

🚀 Enhancement

• Trivial change to bump linc-cli to include pydantic 2 updates #38 ([email protected] @aaronkanzer)

⚠️ Pushed to master

• Merge upstream changes from dandi-cli for pydantic 2.0 ([email protected])
• Add tests for is_same_url() (@jwodder)
• [DATALAD RUNCMD] Rename SPECIES_URI_TEMPLATE into NCBITAXON_URI_TEMPLATE (@yarikoptic)
• Clean up URL parsing in extract_species() (@jwodder)
• Use yarl in is_same_url() (@jwodder)
• Replace most uses of urllib with yarl (@jwodder)
• Add tests (@jwodder)
• Add embargo option to create_dandiset() (@jwodder)
• Add arguments for API query parameters when fetching all Dandisets (@jwodder)
• Report progress in deleting Zarr entries during upload (@jwodder)
• upload: Rename "upload" pyout column to "progress" (@jwodder)
• Adjust joinurl() docs (@jwodder)
• Accept both dandischema 0.9.x and 0.10.x (@jwodder)
• Update for Pydantic v2 (@jwodder)
• Update pydantic requirement to ~= 2.0 (@jwodder)
• Use dandischema 0.9 (@jwodder)

Authors: 4

• @aaronkanzer
• Aaron Kanzer ([email protected])
• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

---

0.6.1 (Wed Feb 14 2024)

🐛 Bug Fix

• Change naming conventions in CLI tool to match LINC #37 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.6.0 (Wed Feb 14 2024)

🚀 Enhancement

• Trivial change to update LINC release from dandi-0.59-1 #36 ([email protected] @aaronkanzer)
• Merge 0.59.1 of dandi-cli into linc-cli #36 ([email protected])

⚠️ Pushed to master

• gh-actions: Bump codecov/codecov-action from 3 to 4 (@dependabot[bot])
• blacklist buggy nwbinspector 0.4.32 (@yarikoptic)
• Failsafe etelemetry import (@TheChymera)
• Remove note from error messages (@jwodder)
• Add notes to error messages & docs about get_metadata() vs. get_raw_metadata() (@jwodder)
• Update zarr_checksum dependency to ~= 0.4.0 (@jwodder)
• Update zarr_checksum dependency to ~= 0.3.2 (@jwodder)
• Ignore irrelevant deprecation warning from pandas (@jwodder)
• Minor codespell fix (@yarikoptic)
• Fix service script tests for change in autogenerated date (@jwodder)
• dandi download dandi://…/dandiset.yaml now downloads dandiset.yaml (@jwodder)
• Update readme (@kabilar)
• Update docstring (@kabilar)
• gh-actions: Bump github/codeql-action from 2 to 3 (@dependabot[bot])
• Add tests of post_upload_size_check() (@jwodder)
• Update README.md (@kabilar)
• Update docs/source/cmdline/validate.rst (@kabilar)
• Update dandi/cli/cmd_validate.py (@kabilar)
• Add test (@jwodder)
• Update docs (@kabilar)
• Update gitignore (@kabilar)
• Properly open filehandles for RemoteReadableAssets (@jwodder)
• Dedup log message (@jwodder)
• Double-check file sizes before & after uploading (@jwodder)
• gh-actions: Bump actions/setup-python from 4 to 5 (@dependabot[bot])
• Copy dandischema.digests.zarr.get_checksum() to dandi-cli (@jwodder)
• Repeatedly double-check return values of zero when spying on super_len() (@jwodder)
• Set 30-second connect & read timeout when downloading files (@jwodder)
• Move imports in functions to top level or annotate why they can't be moved (@jwodder)
• Remove redundant ensure_datetime() call (@jwodder)
• Update for zarr_checksum 0.2.12 (@jwodder)
• Make it compatible with py 3.8, thanks @jwodder (@yarikoptic)
• Ignore deprecation warnings addressed in joblib already (@yarikoptic)
• RF: replace use of deprecated utcnow() (@yarikoptic)
• BF: ignore DeprecationWarning within dateutil which triggers while considering the next listed warning (@yarikoptic)
• Use released 3.12 (@yarikoptic)
• I think we need the .gitattributes here but forgot to git add it (@yarikoptic)
• Upgrade versioneer to the current non-released one with 3.12 support (@yarikoptic)
• Add python 3.12 to supported and test against its RC on github actions (@yarikoptic)

Authors: 7

• @aaronkanzer
• @dependabot[bot]
• Aaron Kanzer ([email protected])
• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• Kabilar Gunalan (@kabilar)
• Yaroslav Halchenko (@yarikoptic)

---

0.5.0 (Wed Feb 14 2024)

🚀 Enhancement

• Update messaging and root directory for lincbrain logs #35 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.4.0 (Mon Feb 12 2024)

🚀 Enhancement

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.3.0 (Mon Feb 12 2024)

🚀 Enhancement

• Update DANDI_API_KEY to LINCBRAIN_API_KEY #33 ([email protected] @aaronkanzer)

🐛 Bug Fix

• More test fixes for patching in test suite #32 ([email protected])

Authors: 3

• @aaronkanzer
• Aaron Kanzer ([email protected])
• Aaron Kanzer ([email protected])

---

0.2.3 (Wed Jan 31 2024)

🐛 Bug Fix

• resolve build process with correct files #31 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.2.2 (Wed Jan 31 2024)

🐛 Bug Fix

• Resolve one other test import for CLI integration tests #30 ([email protected] @aaronkanzer)

Authors: 2

• @aaronkanzer
• Aaron Kanzer ([email protected])

---

0.2.1 (Wed Jan 31 2024)

🐛 Bug Fix

• Alter imports for linc-archive <> CLI integration tests #29 ([email protected] @aaronkanzer)
• Update readme for instructions, correct links #28 ([email protected] @aaronkanzer)

Authors: 3

• @aaronkanzer
• Aaron Kanzer ([email protected])
• Aaron Kanzer ([email protected])

---

0.2.0 (Tue Jan 30 2024)

🚀 Enhancement

• remove changelog #27 ([email protected] @aaronkanzer)
• naming convention in setup.py #26 ([email protected] @aaronkanzer)
• Route to lincbrain-cli for installation #25 ([email protected] @aaronkanzer)
• More trivial change for new git tag #24 ([email protected] @aaronkanzer)
• Use lincbrain release equivalent with dandi #23 ([email protected] @aaronkanzer)
• Include proper PEP naming #22 ([email protected] @aaronkanzer)
• Fix autorc #21 ([email protected] @aaronkanzer)
• Revise versioning convention #20 ([email protected] @aaronkanzer)
• use custom script to pep name files to upload #19 ([email protected] @aaronkanzer)
• Conform to PEP versioning standards #18 ([email protected] @aaronkanzer)
• Add naming suffix to circumvent PyPI historical sem var history #17 ([email protected] @aaronkanzer)
• Update main branch for tagging #16 ([email protected] @aaronkanzer)
• Trivial change with remote tags cleaned up #15 ([email protected] @aaronkanzer)
• Clean changelog for tagging #14 ([email protected] @aaronkanzer)
• Include PR from main branch for GHA test #13 ([email protected] @aaronkanzer)
• Trivial change -- forgot labels #12 ([email protected] @aaronkanzer)
• Try release again with release label #10 ([email protected] @aaronkanzer)
• Trivial change to test labels and releases #9 ([email protected] @aaronkanzer)

🐛 Bug Fix

• Include permissions for actions bot #11 ([email protected] @aaronkanzer)

Authors: 4

• @aaronkanzer
• Aaron Kanzer ([email protected])
• Aaron Kanzer ([email protected])
• Aaron Kanzer ([email protected])

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