NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(plot,ddt_lcm)
S3method(plot,summary.ddt_lcm)
S3method(predict,ddt_lcm)
S3method(predict,summary.ddt_lcm)
S3method(print,ddt_lcm)
S3method(print,summary.ddt_lcm)
S3method(summary,ddt_lcm)
export(A_t_inv_one)
export(A_t_inv_two)
export(a_t_one)
export(a_t_one_cum)
export(a_t_two)
export(a_t_two_cum)
export(compute_IC)
export(create_leaf_cor_matrix)
export(ddtlcm_fit)
export(expit)
export(initialize)
export(logit)
export(plot_tree_with_barplot)
export(plot_tree_with_heatmap)
export(random_detach_subtree)
export(simulate_DDT_tree)
export(simulate_lcm_given_tree)
export(simulate_lcm_response)
export(simulate_parameter_on_tree)
import(data.table)
import(ggplot2)
import(matrixStats)
import(phylobase)
import(testthat)
importFrom(BayesLogit,rpg)
importFrom(Matrix,Diagonal)
importFrom(Matrix,diag)
importFrom(Matrix,kronecker)
importFrom(Rdpack,reprompt)
importFrom(ape,Nnode)
importFrom(ape,Ntip)
importFrom(ape,as.phylo)
importFrom(ape,bind.tree)
importFrom(ape,read.tree)
importFrom(data.table,`:=`)
importFrom(extraDistr,rdirichlet)
importFrom(ggplot2,geom_errorbar)
importFrom(ggpubr,ggarrange)
importFrom(ggtext,element_markdown)
importFrom(ggtree,geom_nodelab)
importFrom(ggtree,geom_tiplab)
importFrom(ggtree,ggtree)
importFrom(graphics,par)
importFrom(label.switching,label.switching)
importFrom(matrixStats,rowVars)
importFrom(methods,as)
importFrom(parallel,mclapply)
importFrom(poLCA,poLCA)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,quantile)
importFrom(stats,rbinom)
importFrom(stats,rgamma)
importFrom(stats,rmultinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(truncnorm,rtruncnorm)