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brianjimenezbrianjimenez
committedApr 19, 2024
Adapted 1ppe example
1 parent 8817da1 commit 4d672e5

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11 files changed

+335
-335
lines changed

11 files changed

+335
-335
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‎example/1ppe/gso_1.out‎ renamed to ‎example/1ppe/swarm_0/gso_1.out‎

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -24,7 +24,7 @@
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‎example/1ppe/gso_10.out‎ renamed to ‎example/1ppe/swarm_0/gso_10.out‎

Lines changed: 12 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -1,30 +1,30 @@
11
#Coordinates RecID LigID Luciferin Neighbor's number Vision Range Scoring
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@@ -56,19 +56,19 @@
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‎example/1ppe/gso_100.out‎ renamed to ‎example/1ppe/swarm_0/gso_100.out‎

Lines changed: 88 additions & 88 deletions
Large diffs are not rendered by default.

‎example/1ppe/gso_20.out‎ renamed to ‎example/1ppe/swarm_0/gso_20.out‎

Lines changed: 19 additions & 19 deletions
Original file line numberDiff line numberDiff line change
@@ -1,35 +1,35 @@
11
#Coordinates RecID LigID Luciferin Neighbor's number Vision Range Scoring
22
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33
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4-
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4+
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55
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66
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77
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88
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99
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1010
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1111
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12-
(-18.8194146, 16.2400421, -9.3108338, 0.7852860, 0.4747400, 0.3376366, -0.2096409) 0 0 -6.10302276 5 1.960 -5.70069830
12+
(-18.8194146, 16.2400421, -9.3108338, 0.7852860, 0.4747400, 0.3376366, -0.2096409) 0 0 -6.10302278 5 1.960 -5.70069830
1313
(-24.4798806, 10.2596771, -4.6067266, 0.7800732, 0.1544670, 0.5421687, -0.2714383) 0 0 0.11296063 5 1.960 1.15845846
1414
(-24.8829117, 17.2699139, -10.1089924, 0.8519653, 0.2792850, 0.3885300, -0.2126014) 0 0 6.43223213 4 5.000 8.07152991
1515
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16-
(-21.6627331, 6.4106702, -8.2440429, 0.8850487, -0.0529073, 0.4207011, -0.1920944) 0 0 5.28664026 9 1.240 8.03745261
16+
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1717
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1818
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1919
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20-
(-24.2402562, 19.3405579, -6.3686347, 0.7947031, 0.3322378, 0.4450889, -0.2448690) 0 0 1.89722613 6 2.600 2.88797781
20+
(-24.2402562, 19.3405579, -6.3686347, 0.7947031, 0.3322378, 0.4450889, -0.2448690) 0 0 1.89722598 6 2.600 2.88797781
2121
(-26.0157684, 15.3086544, -9.3091208, 0.8595505, 0.2679342, 0.3820681, -0.2083462) 0 0 5.65633678 13 2.920 7.08286701
2222
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2323
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2424
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2525
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2626
(-21.8004969, 6.5574580, -8.7172044, 0.8849550, -0.0528115, 0.4208693, -0.1921837) 0 0 6.87784163 4 3.560 8.89558832
27-
(-15.8173042, 8.6069472, -8.1989298, 0.9180023, -0.0016238, 0.3589608, -0.1685712) 0 0 -14.63031816 7 1.960 -17.70191425
27+
(-15.8173042, 8.6069472, -8.1989298, 0.9180023, -0.0016238, 0.3589608, -0.1685712) 0 0 -14.63031824 7 1.960 -17.70191425
2828
(-20.1263090, 15.2836466, -15.4512568, 0.8960491, 0.3450413, 0.2367467, -0.1483019) 0 0 5.02743152 3 2.120 6.40278724
2929
(-15.7186936, 9.3721660, -16.0813829, 0.9592716, 0.1980008, 0.1733284, -0.1027180) 0 0 3.19044036 7 2.280 4.98457829
3030
(-15.6987337, 9.3565363, -16.0817440, 0.9594674, 0.1972411, 0.1731959, -0.1025742) 0 0 3.74352534 3 5.000 4.54649789
3131
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32-
(-21.8541811, 6.5718230, -8.7824226, 0.8849518, -0.0528012, 0.4208755, -0.1921877) 0 0 7.16791965 1 5.000 9.23542334
32+
(-21.8541811, 6.5718230, -8.7824226, 0.8849518, -0.0528012, 0.4208755, -0.1921877) 0 0 7.16794386 1 5.000 9.23542334
3333
(-19.2030761, 17.0916192, -9.4440101, 0.7884944, 0.4662076, 0.3414738, -0.2105296) 0 0 -4.26865175 5 1.240 -4.36770814
3434
(-15.6228553, 8.5132588, -7.9342869, 0.9257002, 0.0196107, 0.3410454, -0.1624269) 0 0 -15.16395465 4 0.680 -18.46771491
3535
(-20.2225917, 15.2526665, -15.4505840, 0.8960578, 0.3450281, 0.2367368, -0.1482958) 0 0 4.97460607 5 3.720 6.43233968
@@ -38,14 +38,14 @@
3838
(-15.6997898, 9.9834765, -15.4077994, 0.9592084, 0.1982527, 0.1733641, -0.1027618) 0 0 1.20905318 10 1.160 2.61560326
3939
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4040
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41-
(-19.8011503, 18.0443297, -9.8313269, 0.7973726, 0.4389091, 0.3547274, -0.2138321) 0 0 -2.77310457 16 2.280 -3.33333758
41+
(-19.8011503, 18.0443297, -9.8313269, 0.7973726, 0.4389091, 0.3547274, -0.2138321) 0 0 -2.77310466 16 2.280 -3.33333758
4242
(-24.5836312, 16.7402782, -10.3946149, 0.8637057, 0.2666259, 0.3753404, -0.2050432) 0 0 6.46178912 3 4.360 8.15396324
4343
(-21.7877201, 19.2118939, -10.8311336, 0.8372678, 0.3149589, 0.3905514, -0.2173780) 0 0 3.86535071 8 3.480 5.52960056
44-
(-21.9618875, 12.0928656, -12.2922742, 0.8717566, 0.2565923, 0.3664501, -0.1997878) 0 0 6.54110300 6 4.840 8.21108043
44+
(-21.9618875, 12.0928656, -12.2922742, 0.8717566, 0.2565923, 0.3664501, -0.1997878) 0 0 6.54109782 6 4.840 8.21108043
4545
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4646
(-21.5879374, 6.5224197, -8.2061671, 0.8851155, -0.0528974, 0.4205859, -0.1920413) 0 0 5.79698274 8 2.040 7.96875892
47-
(-15.9374940, 6.6857628, -9.3285923, 0.8941308, -0.0512290, 0.4046900, -0.1847477) 0 0 -5.81827755 4 4.280 -5.71409696
48-
(-15.6585616, 10.3506311, -14.8466305, 0.9589392, 0.1992791, 0.1735573, -0.1029627) 0 0 -0.06866251 12 1.560 1.69636178
47+
(-15.9374940, 6.6857628, -9.3285923, 0.8941308, -0.0512290, 0.4046900, -0.1847477) 0 0 -5.81827131 4 4.280 -5.71409696
48+
(-15.6585616, 10.3506311, -14.8466305, 0.9589392, 0.1992791, 0.1735573, -0.1029627) 0 0 -0.06868619 12 1.560 1.69636178
4949
(-17.1973461, 7.3832992, -1.7222051, 0.7630197, -0.1161703, 0.5801454, -0.2602627) 0 0 -18.93033774 4 5.000 -24.92362435
5050
(-18.7937744, 5.6443262, -8.5175985, 0.8870293, -0.0535693, 0.4172098, -0.1903822) 0 0 -1.00841783 11 3.080 0.72275843
5151
(-15.8749419, 9.5508671, -15.5123111, 0.9594672, 0.1972403, 0.1731974, -0.1025748) 0 0 4.04152373 2 5.000 5.43694275
@@ -56,19 +56,19 @@
5656
(-23.8227468, 10.1699198, -4.4661888, 0.7714799, 0.1233187, 0.5596884, -0.2763333) 0 0 -2.64623762 6 1.800 -1.54175911
5757
(-20.5539882, 20.2259597, -10.6304963, 0.7947333, 0.4520013, 0.3457758, -0.2110282) 0 0 1.27587532 9 1.400 2.34898501
5858
(-24.5599004, 16.5980629, -10.4607922, 0.8651768, 0.2650070, 0.3736282, -0.2040647) 0 0 6.48246184 1 5.000 8.15544348
59-
(-23.4287303, 18.5083034, -5.8262364, 0.7834239, 0.3419878, 0.4545449, -0.2503600) 0 0 -2.56552915 9 2.280 -1.41832743
59+
(-23.4287303, 18.5083034, -5.8262364, 0.7834239, 0.3419878, 0.4545449, -0.2503600) 0 0 -2.56552914 9 2.280 -1.41832743
6060
(-21.8841475, 19.5440687, -10.4840404, 0.8191306, 0.3516008, 0.3944693, -0.2231499) 0 0 3.54536632 5 3.720 4.57366896
6161
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6262
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6363
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6464
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6565
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6666
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67-
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67+
(-15.6590713, 8.2219183, -8.1150283, 0.9105293, -0.0275364, 0.3744620, -0.1730789) 0 0 -14.22278016 12 2.040 -16.92814960
6868
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6969
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7070
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71-
(-25.4306831, 11.2818119, -4.9927271, 0.7919458, 0.2102619, 0.5097711, -0.2621928) 0 0 2.00291006 9 2.600 2.67017134
71+
(-25.4306831, 11.2818119, -4.9927271, 0.7919458, 0.2102619, 0.5097711, -0.2621928) 0 0 2.00291010 9 2.600 2.67017134
7272
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7373
(-24.5770155, 18.7445892, -7.9378250, 0.8330982, 0.2974050, 0.4089664, -0.2241520) 0 0 4.68433894 9 3.480 6.82569233
7474
(-25.1744595, 10.9233083, -4.6860155, 0.7882438, 0.1895123, 0.5217432, -0.2655953) 0 0 1.56756687 7 2.760 1.87118998
@@ -106,11 +106,11 @@
106106
(-25.0398854, 17.6265467, -9.7633289, 0.8498042, 0.2813084, 0.3910306, -0.2139940) 0 0 6.40283548 5 3.880 8.07657392
107107
(-24.9952493, 17.7107859, -9.3786422, 0.8426232, 0.2883655, 0.3988898, -0.2184454) 0 0 5.84292125 9 2.280 7.85668389
108108
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109-
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109+
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110110
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111111
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112112
(-21.7444543, 12.1348039, -12.3265741, 0.8720550, 0.2558458, 0.3663351, -0.1996536) 0 0 6.56296929 3 1.000 8.34125767
113-
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113+
(-25.6528560, 14.0185593, -4.3432485, 0.8059843, 0.2183464, 0.4885348, -0.2530769) 0 0 -1.68996269 11 2.600 -1.42398867
114114
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115115
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116116
(-15.7595834, 9.2460933, -15.9220859, 0.9594626, 0.1972679, 0.1731914, -0.1025749) 0 0 3.51107932 6 3.960 4.16872145
@@ -139,7 +139,7 @@
139139
(-21.6363698, 21.0936383, -4.9883948, 0.7547182, 0.3778583, 0.4686113, -0.2608200) 0 0 -5.24672284 5 3.320 -5.65484504
140140
(-24.2807565, 19.5019785, -6.6431062, 0.8080078, 0.3211294, 0.4328796, -0.2379381) 0 0 2.07046963 6 2.920 3.85395035
141141
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142-
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142+
(-20.9885605, 20.2442282, -10.9533457, 0.7954669, 0.4424111, 0.3544950, -0.2140984) 0 0 2.32606865 7 1.320 3.67333662
143143
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144144
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145145
(-25.7041095, 16.3337077, -9.7411818, 0.8499096, 0.2798671, 0.3917379, -0.2141718) 0 0 5.91779127 10 2.920 7.44363650
@@ -165,11 +165,11 @@
165165
(-19.2718254, 20.0912082, 0.3455825, 0.5084189, 0.4985487, 0.6133048, -0.3417846) 0 0 -15.42600355 3 5.000 -18.12419357
166166
(-20.9891581, 19.5096736, -10.6544980, 0.8050250, 0.4165037, 0.3633538, -0.2154841) 0 0 1.13217281 10 0.920 2.54241587
167167
(-20.4346858, 18.7011250, -10.2878804, 0.8093858, 0.4035765, 0.3678071, -0.2161910) 0 0 -0.36099396 4 2.120 0.68573092
168-
(-15.8325322, 8.5964633, -8.2082572, 0.9213865, -0.0037761, 0.3518616, -0.1650031) 0 0 -13.76520858 2 1.080 -15.72957999
168+
(-15.8325322, 8.5964633, -8.2082572, 0.9213865, -0.0037761, 0.3518616, -0.1650031) 0 0 -13.76520842 2 1.080 -15.72957999
169169
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170170
(-26.4495262, 9.4377702, -9.4721279, 0.8454016, 0.0895792, 0.4727732, -0.2318561) 0 0 7.01276724 0 5.000 8.76596145
171171
(-21.6860283, 6.3126019, -8.1304632, 0.8850100, -0.0528456, 0.4207719, -0.1921343) 0 0 6.79556509 5 3.720 9.17679223
172-
(-19.2377682, 16.9619509, -9.7175045, 0.7849664, 0.4748427, 0.3380946, -0.2098672) 0 0 -2.64199444 1 1.880 -1.68558338
172+
(-19.2377682, 16.9619509, -9.7175045, 0.7849664, 0.4748427, 0.3380946, -0.2098672) 0 0 -2.64199408 1 1.880 -1.68558338
173173
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174174
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175175
(-16.4713419, 18.3395833, -9.9886553, 0.7845499, 0.4965487, 0.3127449, -0.2002786) 0 0 -7.57478181 12 3.320 -10.06776776
@@ -180,7 +180,7 @@
180180
(-22.6331247, 20.5147847, -5.5481745, 0.7918570, 0.3373421, 0.4458282, -0.2457641) 0 0 -3.11975650 8 3.000 -3.10553301
181181
(-15.7492692, 9.4119214, -15.9205920, 0.9594667, 0.1972419, 0.1731983, -0.1025754) 0 0 4.11417866 0 5.000 5.15816789
182182
(-22.0130154, 12.3865050, -12.2334711, 0.8714252, 0.2575746, 0.3664832, -0.1999087) 0 0 6.55662831 4 3.800 8.27717512
183-
(-13.4254446, 11.3955815, 0.4123839, 0.4670744, -0.0078139, 0.8005004, -0.3754725) 0 0 -36.95672141 1 5.000 -45.70713024
183+
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184184
(-15.6887684, 10.2353793, -14.8940579, 0.9583048, 0.2017502, 0.1739410, -0.1034081) 0 0 0.19854352 7 1.640 1.73436592
185185
(-21.1096681, 10.6865753, -2.5249805, 0.7694060, 0.1097286, 0.5648659, -0.2773095) 0 0 -13.07105988 6 4.280 -14.84261817
186186
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‎example/1ppe/gso_30.out‎ renamed to ‎example/1ppe/swarm_0/gso_30.out‎

Lines changed: 13 additions & 13 deletions
Original file line numberDiff line numberDiff line change
@@ -10,7 +10,7 @@
1010
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30-
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48-
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@@ -90,7 +90,7 @@
9090
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@@ -110,13 +110,13 @@
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130130
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133-
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133+
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134134
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135135
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136136
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163163
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165-
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166166
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184-
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‎example/1ppe/gso_40.out‎ renamed to ‎example/1ppe/swarm_0/gso_40.out‎

Lines changed: 8 additions & 8 deletions
Original file line numberDiff line numberDiff line change
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119-
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119+
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120120
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121121
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122122
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@@ -130,7 +130,7 @@
130130
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132132
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133-
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133+
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134134
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135135
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136136
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@@ -184,7 +184,7 @@
184184
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185185
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186186
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187-
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187+
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188188
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189189
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190190
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‎example/1ppe/gso_50.out‎ renamed to ‎example/1ppe/swarm_0/gso_50.out‎

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -18,7 +18,7 @@
1818
(-24.9681307, 8.7733276, -8.8678162, 0.8812256, -0.0347915, 0.4280510, -0.1974926) 0 0 8.36498448 1 4.600 10.47396818
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2020
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21+
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60-
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60+
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6363
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7878
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81-
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81+
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8383
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184184
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185185
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186186
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187-
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187+
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188188
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189189
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‎example/1ppe/gso_60.out‎ renamed to ‎example/1ppe/swarm_0/gso_60.out‎

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -18,7 +18,7 @@
1818
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2020
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21-
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21+
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2222
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2323
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@@ -50,14 +50,14 @@
5050
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53-
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53+
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5454
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5555
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5757
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60-
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60+
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@@ -81,7 +81,7 @@
8181
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8282
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8383
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84-
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84+
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8585
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8686
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8787
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@@ -166,7 +166,7 @@
166166
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167167
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168168
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169-
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169+
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170170
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171171
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172172
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‎example/1ppe/gso_70.out‎ renamed to ‎example/1ppe/swarm_0/gso_70.out‎

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -4,7 +4,7 @@
44
(-24.6710881, 16.7840277, -10.4693199, 0.8578081, 0.2726817, 0.3822902, -0.2089598) 0 0 6.54072745 0 0.400 8.20735712
55
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7-
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7+
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88
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1010
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@@ -14,7 +14,7 @@
1414
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17-
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17+
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1818
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2020
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@@ -30,7 +30,7 @@
3030
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3131
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3232
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33-
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33+
(-24.6762229, 16.1187000, -10.6289046, 0.8578094, 0.2726800, 0.3822888, -0.2089590) 0 0 6.54546995 18 0.000 8.21600672
3434
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3535
(-21.3629328, 14.4716998, -15.3861310, 0.8954991, 0.3413998, 0.2425578, -0.1506431) 0 0 6.25148110 6 2.760 7.86075096
3636
(-24.5191937, 16.5102269, -10.8502667, 0.8578086, 0.2726883, 0.3822852, -0.2089582) 0 0 6.55706092 0 0.400 8.22028445
@@ -60,15 +60,15 @@
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6161
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6262
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63-
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63+
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6666
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6868
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6969
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7070
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71-
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71+
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7272
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7373
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7474
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@@ -81,19 +81,19 @@
8181
(-17.4666612, 6.4426875, -17.2018465, 0.9594498, 0.1973077, 0.1732094, -0.1025877) 0 0 8.79823372 6 0.560 10.82418301
8282
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8383
(-17.4716322, 6.4569305, -17.1823812, 0.9594498, 0.1973077, 0.1732094, -0.1025877) 0 0 8.81813717 2 1.040 11.12785922
84-
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84+
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8585
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8686
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8787
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8888
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89-
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89+
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9090
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9191
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9292
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9393
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9494
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9595
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96-
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96+
(-24.7373396, 16.5319983, -10.7082265, 0.8578080, 0.2726824, 0.3822899, -0.2089598) 0 0 6.51221432 0 0.400 8.16474178
9797
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9898
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9999
(-21.2175101, 14.3646763, -15.3930317, 0.8955010, 0.3414120, 0.2425384, -0.1506352) 0 0 6.32986784 2 4.280 7.97919768
@@ -109,7 +109,7 @@
109109
(-22.2855401, 5.8634640, -8.9370824, 0.8848689, -0.0523786, 0.4210454, -0.1923129) 0 0 7.83292355 12 0.000 9.80675192
110110
(-24.5411299, 16.1373867, -10.2812294, 0.8578079, 0.2726840, 0.3822890, -0.2089595) 0 0 6.50909290 8 0.000 8.18830116
111111
(-24.6598979, 16.4190406, -10.7021207, 0.8578099, 0.2726840, 0.3822855, -0.2089579) 0 0 6.42671510 53 0.000 8.05803135
112-
(-22.9257798, 10.0161824, -11.1102643, 0.8714373, 0.2574494, 0.3665361, -0.1999202) 0 0 7.82667524 2 2.080 9.95012695
112+
(-22.9257798, 10.0161824, -11.1102643, 0.8714373, 0.2574494, 0.3665361, -0.1999202) 0 0 7.82682981 2 2.080 9.95012695
113113
(-24.9156082, 9.0653193, -8.9652490, 0.8809953, -0.0337341, 0.4284669, -0.1978015) 0 0 8.39902401 0 0.560 10.44000231
114114
(-24.4273877, 16.9774267, -10.7110160, 0.8578079, 0.2726846, 0.3822888, -0.2089595) 0 0 6.55931984 0 0.400 8.21339189
115115
(-20.6068663, 20.5758041, 0.5437647, 0.5084174, 0.4985506, 0.6133044, -0.3417847) 0 0 -10.55509386 5 4.920 -13.29423940
@@ -125,7 +125,7 @@
125125
(-24.5230936, 16.8839923, -10.6401985, 0.8578071, 0.2726874, 0.3822885, -0.2089597) 0 0 6.58491538 4 0.480 8.23903686
126126
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127127
(-21.9999038, 6.2648859, -8.6982181, 0.8848474, -0.0522697, 0.4210894, -0.1923453) 0 0 7.80541581 8 0.080 9.74821385
128-
(-21.9794788, 6.0291889, -8.7334596, 0.8848518, -0.0522921, 0.4210803, -0.1923386) 0 0 7.84686581 11 0.240 9.66448331
128+
(-21.9794788, 6.0291889, -8.7334596, 0.8848518, -0.0522921, 0.4210803, -0.1923386) 0 0 7.84683103 11 0.240 9.66448331
129129
(-22.0432310, 6.0258844, -8.8185395, 0.8848624, -0.0523457, 0.4210587, -0.1923227) 0 0 7.89796859 0 0.400 10.00976145
130130
(-23.8560642, 9.9147308, -11.3147265, 0.8718181, 0.2552311, 0.3671530, -0.1999722) 0 0 7.63841650 0 0.640 9.64392381
131131
(-24.5577526, 9.1633595, -8.5048256, 0.8809924, -0.0337206, 0.4284722, -0.1978055) 0 0 8.38941993 0 0.400 10.47185722
@@ -138,7 +138,7 @@
138138
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139139
(-24.5223290, 17.0296262, -10.5436821, 0.8578068, 0.2726835, 0.3822913, -0.2089606) 0 0 6.55706878 0 0.400 8.18544484
140140
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141-
(-23.2947971, 10.2119261, -11.2521298, 0.8769424, 0.2217853, 0.3762015, -0.2006385) 0 0 7.48009468 14 1.240 9.24098643
141+
(-23.2947971, 10.2119261, -11.2521298, 0.8769424, 0.2217853, 0.3762015, -0.2006385) 0 0 7.48009420 14 1.240 9.24098643
142142
(-24.5263409, 16.6755052, -10.7157490, 0.8578096, 0.2726794, 0.3822888, -0.2089589) 0 0 6.63457712 0 4.000 8.29330364
143143
(-24.6267476, 16.7304483, -10.5990892, 0.8578089, 0.2726845, 0.3822870, -0.2089587) 0 0 6.52690635 0 0.400 8.22077123
144144
(-20.9146489, 20.4515703, 0.6244275, 0.5084174, 0.4985506, 0.6133044, -0.3417847) 0 0 -10.70179303 6 4.920 -13.89838571

‎example/1ppe/gso_80.out‎ renamed to ‎example/1ppe/swarm_0/gso_80.out‎

Lines changed: 84 additions & 84 deletions
Large diffs are not rendered by default.

‎example/1ppe/gso_90.out‎ renamed to ‎example/1ppe/swarm_0/gso_90.out‎

Lines changed: 89 additions & 89 deletions
Large diffs are not rendered by default.

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