From b96ab65a7dd86261e0b75eaa63e722d6a5d7f310 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Daniel=20N=C3=BCst?= Date: Mon, 28 Jun 2021 20:11:25 +0200 Subject: [PATCH] fix bib entries with abstracts --- data/citations/metadata-in-rcr-refs.bib | 58 +++++++++++++++---------- 1 file changed, 36 insertions(+), 22 deletions(-) diff --git a/data/citations/metadata-in-rcr-refs.bib b/data/citations/metadata-in-rcr-refs.bib index 21d9fe5..a2ad653 100644 --- a/data/citations/metadata-in-rcr-refs.bib +++ b/data/citations/metadata-in-rcr-refs.bib @@ -563,7 +563,8 @@ @UNPUBLISHED{Obels2019-sy year = 2019, url = "psyarxiv.com/fk8vh", keywords = "data; open data; Psychology; reproducibility; RR", - doi = "10.31234/osf.io/fk8vh" + doi = "10.31234/osf.io/fk8vh", + note = {PsyArXiv Preprint} } @ARTICLE{Ciccarese2013-lm, @@ -632,6 +633,7 @@ @gmail.com. @ARTICLE{noauthor_2020-zo, title = "Welcome to a new {ERA} of reproducible publishing", + author = {Emmy Tsang and Giuliano Maciocci}, abstract = "New open-source technology lets eLife authors publish Executable Research Articles that treat live code and data as first-class citizens.", @@ -914,6 +916,7 @@ @MISC{Angelino2010-cs @INCOLLECTION{Richardson2016-fu, title = "Geospatial Semantic Web", + author = {Krzysztof Janowicz and Pascal Hitzler}, booktitle = "International Encyclopedia of Geography: People, the Earth, Environment and Technology", editor = "Richardson, Douglas and Castree, Noel and Goodchild, Michael F @@ -1152,7 +1155,7 @@ @ARTICLE{Moreau_undated-lo author = "Moreau, Luc and Ding, Li and Futrelle, Joe and Garijo, D and Groth, Paul and Jewell, Mike and Miles, Simon and Missier, Paolo and Pan, Jeff and Zhao, Jun", - journal = "URL http://openprovenance. org/model/opmo. (Cited on page 139. )" + journal = "URL http://openprovenance.org/model/opmo. (Cited on page 139. )" } @ARTICLE{Janowicz2014-wz, @@ -1222,6 +1225,7 @@ @ARTICLE{Tierney2020-ue year = 2020, url = "http://arxiv.org/abs/2002.11626", archivePrefix = "arXiv", + journal = "arXiv", eprint = "2002.11626", primaryClass = "cs.DL", arxivid = "2002.11626" @@ -2534,6 +2538,7 @@ @ARTICLE{Emsley2018-yd @ARTICLE{noauthor_undated-dp, title = "Journal Article Tag Suite 1.0: National Information Standards Organization standard of journal extensible markup language", + author = {Sun Huh}, abstract = "In the era of information technology, scholarly journals cannot escape the rising tide of technological advancement. To be exposed more easily to readers, the web forms of scholarly @@ -2562,7 +2567,8 @@ @ARTICLE{noauthor_undated-dp url = "http://escienceediting.org/journal/view.php?number=21", language = "en", issn = "0036-8326", - doi = "10.6087/kcse.2014.1.99" + doi = "10.6087/kcse.2014.1.99", + year = {2014} } @ARTICLE{The_Gene_Ontology_Consortium2019-pt, @@ -2636,6 +2642,7 @@ @ARTICLE{Pineau2020-bs year = 2020, url = "http://arxiv.org/abs/2003.12206", archivePrefix = "arXiv", + journal = "arXiv", eprint = "2003.12206", primaryClass = "cs.LG", arxivid = "2003.12206" @@ -3075,19 +3082,16 @@ @ARTICLE{Berthold2009-uw % The entry below contains non-ASCII chars that could not be converted % to a LaTeX equivalent. -@ARTICLE{Oberkampf2018-kn, +@techreport{Oberkampf2018-kn, title = "20 Allotrope Data {Format--Semantic} Data Management in Life Sciences. pdf", author = "Oberkampf, Heiner and Krieg, Helge and Senger, Christian and Weber, Thomas and Colsman, Wolfgang", - abstract = "… visualization. We present the Allotrope Data Format, the - Allotrope Foundation Ontologies, ZONTAL Space and OSee as a - comprehensive set of tools for laboratory data management … tion - 1 Allotrope Foundation and Allotrope Data Format …", - publisher = "Semantic Web Applications and Tools for Healthcare and Life - Sciences", + abstract = "Research intensive industries like the (bio-) pharmaceutical industry require a data architecture enabling universal laboratory data storage comprising describing metadata, ontologies and vocabularies, long-term data persistence, and metadata structure visualization. We present the Allotrope Data Format, the Allotrope Foundation Ontologies, ZONTAL Spaceand OSee as a comprehensive set of tools for laboratory data management.", + publisher = "Semantic Web Applications and Tools for Healthcare and Life Sciences", year = 2018, - url = "https://swat4hcls.figshare.com/articles/20_Allotrope_Data_Format_Semantic_Data_Management_in_Life_Sciences_pdf/7346489/files/13574621.pdf" + url = "https://swat4hcls.figshare.com/articles/20_Allotrope_Data_Format_Semantic_Data_Management_in_Life_Sciences_pdf/7346489/files/13574621.pdf", + institution = {{OSTHUS}} } @ARTICLE{Arabas2014-dq, @@ -3127,6 +3131,7 @@ @ARTICLE{Arabas2014-dq year = 2014, url = "http://arxiv.org/abs/1408.2123", archivePrefix = "arXiv", + journal = "arXiv", eprint = "1408.2123", primaryClass = "cs.CE", arxivid = "1408.2123" @@ -3216,6 +3221,7 @@ @ARTICLE{Publio2018-ib year = 2018, url = "http://arxiv.org/abs/1807.05351", archivePrefix = "arXiv", + journal = "arXiv", eprint = "1807.05351", primaryClass = "cs.LG", arxivid = "1807.05351" @@ -3228,13 +3234,14 @@ @ARTICLE{Cao_undated-bz V{\i}ctor and Jones, Matthew B and Lud{\"a}scher, Bertram and McPhillips, Timothy and Missier, Paolo and Schwalm, Christopher and Slaughter, Peter and Vieglais, Dave and {Others}", - abstract = "Abstract. The DataONE federated data network has adopted and + abstract = "The DataONE federated data network has adopted and extended the PROV model to support the collection, storage, indexing, and user browsing of the provenance of data packages stored in its member nodes. The PROV extension, ProvONE, adds provenance", journal = "homepages.cs.ncl.ac.uk", - url = "http://homepages.cs.ncl.ac.uk/paolo.missier/doc/dataone-prov-3-years-later.pdf" + url = "http://homepages.cs.ncl.ac.uk/paolo.missier/doc/dataone-prov-3-years-later.pdf", + year = {2016} } @ARTICLE{Stodden2013-ce, @@ -4195,6 +4202,7 @@ @ARTICLE{Barba2018-qv year = 2018, url = "http://arxiv.org/abs/1802.03311", archivePrefix = "arXiv", + journal = "arXiv", eprint = "1802.03311", primaryClass = "cs.DL", arxivid = "1802.03311" @@ -4484,6 +4492,7 @@ @graphpad.com. @ARTICLE{noauthor_2021-it, title = "Announcing the next phase of Executable Research Articles", + autor = {Giulia Guizzardi and Nokome Bentley and Giuliano Maciocci}, abstract = "eLife and Stencila renew their partnership to make Executable Research Articles accessible to even more researchers and publishers.", @@ -4545,20 +4554,20 @@ @ARTICLE{Sefton1_undated-xr files, BioCompute Objects for regulatory science [9], CodeMeta for software …", journal = "conference.eresearch.edu.au", - url = "https://conference.eresearch.edu.au/wp-content/uploads/2019/08/2019-eResearch_103_-Introducing-RO-Crate-research-object-data-packaging.pdf" + url = "https://conference.eresearch.edu.au/wp-content/uploads/2019/08/2019-eResearch_103_-Introducing-RO-Crate-research-object-data-packaging.pdf", + year = {2019} } % The entry below contains non-ASCII chars that could not be converted % to a LaTeX equivalent. -@MISC{noauthor_2020-ah, +@unpublished{noauthor_2020-ah, title = "{ISO/TC} 276 - Biotechnology", booktitle = "{ISO}", abstract = "Standardization in the field of biotechnology processes that includes the following topics: Terms and definitions; biobanks and bioresources; analytical methods; bioprocessing; data processing including annotation, analysis, validation, - comparability and integration; metrology. ISO/TC 276 - Biotechnology …", + comparability and integration; metrology. ISO/TC 276 Biotechnology will work closely with related committes in order to identify standardization needs and gaps, and collaborate with other organisations to avoid duplications and overlapping standardization activities. The committee will not pursue subjects within the scope of other TCs including but not limited to ISO/TC 212 and ISO/TC 34/SC 16.", year = 2020, url = "https://www.iso.org/committee/4514241.html", howpublished = "\url{https://www.iso.org/committee/4514241.html}", @@ -5054,7 +5063,7 @@ @ARTICLE{Valenzuela-Escarcega2018-ue keywords = "charlie\_rcr.bib" } -@ARTICLE{Hoyle2016-lt, +@techreport{Hoyle2016-lt, title = "{DDI} as a Common Format for Export and Import for Statistical Packages", author = "Hoyle, Larry and Wackerow, Joachim", @@ -5081,6 +5090,7 @@ @ARTICLE{Hoyle2016-lt publisher = "IASSIST Quarterly", year = 2016, url = "https://kuscholarworks.ku.edu/handle/1808/19900", + institution = {KU Scholar Works}, keywords = "DDI, data formats, metadata, statistical packages, Stat/Transfer, JMP, R, SAS, SPSS, Stata; Supplementary materials" } @@ -5494,6 +5504,7 @@ @ARTICLE{Ali2020-fw year = 2020, url = "http://arxiv.org/abs/2001.10560", archivePrefix = "arXiv", + journal = "arXiv", eprint = "2001.10560", primaryClass = "cs.LG", arxivid = "2001.10560" @@ -5593,7 +5604,7 @@ @ARTICLE{Love2014-se pmc = "PMC4302049" } -@UNPUBLISHED{Kulmanov2020-mv, +@article{Kulmanov2020-mv, title = "Machine learning with biomedical ontologies", author = "Kulmanov, Maxat and Smaili, Fatima Zohra and Gao, Xin and Hoehndorf, Robert", @@ -6043,7 +6054,7 @@ @gmail.com. doi = "10.1038/s41592-021-01169-5" } -@ARTICLE{Allaire2016-vl, +@misc{Allaire2016-vl, title = "Rticles: Article Formats for {R} Markdown", author = "Allaire, J J and Wickham, H and Xie, Y and Vaidyanathan, R and {Others}", @@ -6248,7 +6259,7 @@ @ARTICLE{Duck2014-vk pmc = "PMC4147923" } -@ARTICLE{Jones2016-ta, +@techreport{Jones2016-ta, title = "{CodeMeta}: an exchange schema for software metadata. {KNB} Data Repository", author = "Jones, Matthew B and Boettiger, Carl and Mayes, Abby Cabunoc and @@ -6258,6 +6269,7 @@ @ARTICLE{Jones2016-ta Ashley and Hong, Neil Chue and Cruse, Patricia and Katz, Dan and Goble, Carole", publisher = "KNB Data Repository", + institution = "KNB Data Repository", year = 2016, url = "http://dx.doi.org/10.5063/schema/codemeta-1.0", doi = "10.5063/schema/codemeta-1.0" @@ -6279,7 +6291,7 @@ @ARTICLE{Boettiger2015-om doi = "10.1145/2723872.2723882" } -@UNPUBLISHED{Halioui2016-rr, +@article{Halioui2016-rr, title = "Towards an ontology-based recommender system for relevant bioinformatics workflows", author = "Halioui, Ahmed and Valtchev, Petko and Diallo, Abdoulaye Banire", @@ -6676,6 +6688,7 @@ @ARTICLE{McPhillips2015-hu year = 2015, url = "http://arxiv.org/abs/1502.02403", archivePrefix = "arXiv", + journal = "arXiv", eprint = "1502.02403", primaryClass = "cs.SE", arxivid = "1502.02403" @@ -6850,6 +6863,7 @@ @ARTICLE{Wattanakriengkrai2020-ou year = 2020, url = "http://arxiv.org/abs/2004.00199", archivePrefix = "arXiv", + journal = "arXiv", eprint = "2004.00199", primaryClass = "cs.SE", arxivid = "2004.00199"