run-unit-tests_conda-forge.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions

name: Tests (conda-forge)

on:
  push:
    branches: [main, feature_pytest_click]
  pull_request:
    branches: [main]
  workflow_dispatch:

jobs:
  test:
    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -l {0}
    strategy:
      fail-fast: false
      matrix:
        os: [ macos-latest, ubuntu-latest, windows-2019 ]
        python-version: ['3.9', '3.10', '3.11']
    steps:
    - uses: actions/checkout@v3  # for the test data
    - uses: conda-incubator/setup-miniconda@v2
      with:
        python-version: ${{ matrix.python-version }}
        channels: conda-forge
        channel-priority: true
        activate-environment: test
        miniforge-variant: Mambaforge
#        mamba-version: "*"
    - name: Install dependencies
      run: |
        mamba info
        mamba list
        mamba install -c conda-forge rasterio opencv numpy click tqdm pyyaml pytest pytest-cov
        mamba list
    - name: Run unit tests
      run: |
        python -m pytest --cov=simple_ortho --cov-report=term-missing --cov-report=xml:coverage.xml ./tests

#jobs:
#  test:
#    runs-on: ${{ matrix.os }}
#    strategy:
#      fail-fast: false
#      matrix:
#        python-version: ['3.9', '3.10', '3.11']
#        os: [ macos-latest, ubuntu-latest, windows-2019 ]
#    steps:
#    - uses: actions/checkout@v3
#    - name: Set up Python ${{ matrix.python-version }}
#      uses: actions/setup-python@v4
#      with:
#        python-version: ${{ matrix.python-version }}
#    - name: Install dependencies
#      run: |
#        python -m pip install --upgrade pip
#        python -m pip install flake8 pytest pytest-cov
#        python -m pip install rasterio "opencv-python-headless<4.8" numpy click tqdm pyyaml
#        python -m pip list
#    - name: Lint with flake8
#      run: |
#        # stop the build if there are Python syntax errors or undefined names
#        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
#        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
#        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
#    - name: Test with pytest
#      timeout-minutes: 5
#      run: |
#        python -m pytest --cov=simple_ortho --cov-report=term-missing --cov-report=xml:coverage.xml ./tests
#    - name: Upload coverage
#      uses: codecov/codecov-action@v3
#      with:
#        fail_ci_if_error: true
#        files: ./coverage.xml
#        token: ${{ secrets.CODECOV_TOKEN }}