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Adding coverage depth information in the GFA produced by Raven #74

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jflot opened this issue May 11, 2023 · 2 comments
Open

Adding coverage depth information in the GFA produced by Raven #74

jflot opened this issue May 11, 2023 · 2 comments

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@jflot
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jflot commented May 11, 2023

Thanks for your great tool!
In the GFA produced by Raven there are only two informations for each contig: LN (length of the contig) and RC (read count). What then happens when loading the GFA in Bandage is that the "coverage depth" displayed is RC/LN, which is a meaningless, very small number (e.g. 60/18412 = 0.003 for a 18412 bp contig supported by 60 reads). Would it be possible to add a DP field (like what e.g. Flye, Unicycler et SPAdes do) with the coverage depth information?

@lipi0056
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We added dp tag to Raven GFA output. Please pull the latest version of the master branch and rebuild to activate.

@jflot
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jflot commented Jun 15, 2023

Thanks! Any chance for the conda version to be updated as well?

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