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Batching improvements

dominikstanojeviccreated candidate_batching • c81a69f • 
on Feb 7

Added ranges (start and end indices) for output reads

dominikstanojeviccreated output_ranges • 6e1a3bd • 
on Dec 11, 2024

Deleted branch

dominikstanojevicdeleted fix_asserts • 
on Dec 11, 2024

Merge pull request #74 from lbcb-sci/fix_asserts

Pull request merge
dominikstanojevicpushed 2 commits to main • 01eab1d…204d29e • 
on Dec 11, 2024

Bugfix related to assertions in calculate_accuracy function

dominikstanojeviccreated fix_asserts • 28e4e07 • 
on Dec 2, 2024

Update README.md

dominikstanojevicpushed 1 commit to main • d7a51b1…01eab1d • 
on Nov 8, 2024

Merge pull request #68 from lbcb-sci/test_data

Pull request merge
dominikstanojevicpushed 4 commits to main • 29ef9c2…d7a51b1 • 
on Nov 8, 2024

Update README.txt

dehui333pushed 1 commit to test_data • 2e13b01…769198d • 
on Nov 8, 2024

Update README.txt

dehui333pushed 1 commit to test_data • 979559c…2e13b01 • 
on Nov 8, 2024

add test data

dehui333created test_data • 979559c • 
on Nov 8, 2024

reduce -m for minimap2 parameters

dehui333created mm2_param • ea8d875 • 
on Oct 22, 2024

updated error rates script

dehui333pushed 1 commit to manuscript • ec24e6d…3522d8f • 
on Oct 4, 2024

fix warnings about unused

dehui333pushed 1 commit to write_to_tar • 0e600c9…3f973cd • 
on Sep 27, 2024

Update README.md

dominikstanojevicpushed 1 commit to main • 137b00d…29ef9c2 • 
on Sep 26, 2024

Deleted branch

dominikstanojevicdeleted fix_warnings • 
on Sep 20, 2024

Merge pull request #58 from lbcb-sci/fix_warnings

Pull request merge
dominikstanojevicpushed 6 commits to main • fa27604…137b00d • 
on Sep 20, 2024

Update herro-singularity.def

dominikstanojevicpushed 1 commit to fix_warnings • 1e61ab9…d352926 • 
on Sep 20, 2024

update singularity image and mm2 parameters

dehui333pushed 1 commit to fix_warnings • bfa9ff4…1e61ab9 • 
on Sep 20, 2024

Fixes

dominikstanojevicpushed 1 commit to fix_warnings • 9300f81…bfa9ff4 • 
on Sep 20, 2024

Bugfix

dominikstanojevicpushed 1 commit to fix_warnings • a8f3234…9300f81 • 
on Sep 20, 2024

Fixes

dominikstanojeviccreated fix_warnings • a8f3234 • 
on Sep 20, 2024

Merge pull request #57 from lbcb-sci/jit-cast

Pull request merge
dominikstanojevicpushed 12 commits to main • b16d1f6…fa27604 • 
on Sep 20, 2024

Update Cargo.toml

dominikstanojevicpushed 1 commit to jit-cast • b085342…25e42b7 • 
on Sep 20, 2024

Update batch.py

dominikstanojevicpushed 1 commit to jit-cast • a4049cf…b085342 • 
on Sep 20, 2024

Deleted branch

dominikstanojevicdeleted dehui333-patch-1 • 
on Sep 19, 2024

Merge pull request #54 from lbcb-sci/dehui333-patch-1

Pull request merge
dominikstanojevicpushed 2 commits to main • deccc46…b16d1f6 • 
on Sep 19, 2024

add thread_id to dependency

dehui333created write_to_tar • 0e600c9 • 
on Sep 11, 2024

Update create_batched_alignments.sh

dehui333created dehui333-patch-1 • fe13dea • 
on Aug 30, 2024

Deleted branch

dehui333deleted update_mm2_parameters • 
on Aug 30, 2024

Update create_batched_alignments.sh

dehui333pushed 1 commit to update_mm2_parameters • deccc46…da25a48 • 
on Aug 8, 2024