Errors and broken references with texlive2020

[moemode]

Hey,
i was using the template in conjunction with https://hub.docker.com/r/qmcgaw/latexdevcontainer which comes with texlive2020.
I get the following problems regarding "too many }'s" and "undefined control sequences". A viewable pdf with broken references is created. Does anyone know of a fix or are these harmless?

Package footnotehyper Warning: 
 The footnote environment will not be fully functional, sorry.
 You may try to email the author this meaning of \@makefntext:
 \long macro:->\cref@constructprefix {footnote}{\cref@result }\protected@edef \cref@currentlabel {[footnote][\arabic {footnote}][\cref@result ]\p@footnote \@thefnmark }\cref@old@makefntext 
 together with the used preamble.

/workspace/main-english.tex:46: Too many }'s.
\FNH@check@a ...tnotes \expandafter \@gobble \fi }
                                                  {}}\@secondoftwo \scantoke...
l.46 \begin{document}
                     
/workspace/main-english.tex:46: Too many }'s.
\FNH@check@a ...tes \expandafter \@gobble \fi }{}}
                                                  \@secondoftwo \scantokens ...
l.46 \begin{document}
                     
/workspace/main-english.tex:46: Undefined control sequence.
\FNH@check@a ...FNH@postfntext {#2}}\FNH@restore@ 
                                                  \expandafter \FNH@check@b ...
l.46 \begin{document}
                     
/workspace/main-english.tex:46: Extra \fi.
\FNH@check@a ...re@ \expandafter \FNH@check@b \fi 
                                                  
l.46 \begin{document}
                     

Package footnotehyper Warning: 
 The footnote environment will not be fully functional, sorry.
 You may try to email the author this meaning of \@makefntext:
 \long macro:->\cref@constructprefix {footnote}{\cref@result }\protected@edef \cref@currentlabel {[footnote][\arabic {footnote}][\cref@result ]\p@footnote \@thefnmark }\cref@old@makefntext 
 together with the used preamble.

/workspace/main-english.tex:46: Undefined control sequence.
\__hook begindocument ... }\relax \if@LN@obsolete 
                                                  \PackageError {lineno}{Obs...
l.46 \begin{document}
                     

/workspace/main-english.tex:46: Package lineno Error: Obsolete extension package(s).

See the lineno package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.46 \begin{document}
                     
/workspace/main-english.tex:46: Extra \fi.
\__hook begindocument ...no longer be loaded.}\fi 
                                                  \ifcsname pdfstringdefDisa...
l.46 \begin{document}
                     
No file pythontex-files-main-english/main-english.pytxmcr.
Run PythonTeX to create it.
(/usr/local/texlive/2020/texmf-dist/tex/latex/doctools/doctools.sty (/usr/local/texlive/2020/texmf-dist/tex/latex/listings/lstlang1.sty) (/usr/local/texlive/2020/texmf-dist/tex/latex/listings/lstlang2.sty) (/usr/local/texlive/2020/texmf-dist/tex/latex/listings/lstlang3.sty)) (/usr/local/texlive/2020/texmf-dist/tex/latex/newtx/ot1ntxtlf.fd)<<ot1.cmap>><<oml.cmap>> (/usr/local/texlive/2020/texmf-dist/tex/latex/newtx/untxmia.fd) (/usr/local/texlive/2020/texmf-dist/tex/latex/newtx/untxsym.fd) (/usr/local/texlive/2020/texmf-dist/tex/latex/newtx/untxsyc.fd) (/usr/local/texlive/2020/texmf-dist/tex/latex/tex-gyre/t1qhv.fd) (/usr/local/texlive/2020/texmf-dist/tex/latex/newtx/t1ntxtt.fd) (./commands.tex)

The full output is:

This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
(/workspace/main-english.tex
LaTeX2e <2020-10-01> patch level 4
L3 programming layer <2021-01-09> xparse <2020-03-03> (./pre-documentclass.tex (/usr/local/texlive/2020/texmf-dist/tex/latex/kvoptions/kvoptions-patch.sty

Package kvoptions-patch Warning: kvoptions-patch is not compatible with 
(kvoptions-patch)                LaTeX 2020-10-01
(kvoptions-patch)                Loading is aborted on input line 49.

) (/usr/local/texlive/2020/texmf-dist/tex/latex/nag/nag.sty (/usr/local/texlive/2020/texmf-dist/tex/latex/nag/nag-l2tabu.cfg) (/usr/local/texlive/2020/texmf-dist/tex/latex/nag/nag-orthodox.cfg)) (/usr/local/texlive/2020/texmf-dist/tex/generic/iftex/ifluatex.sty (/usr/local/texlive/2020/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/local/texlive/2020/texmf-dist/tex/latex/koma-script/scrbook.cls
Document Class: scrbook 2020/09/21 v3.32 KOMA-Script document class (book)
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For additional information on amsmath, use the `?' option.
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Style `ntheorem', Version 1.33 <2011/08/15>
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Package scrwfile Warning: THIS IS AN ALPHA VERSION!
(scrwfile)                USAGE OF THIS VERSION IS ON YOUR OWN RISK!
(scrwfile)                EVERYTHING MAY HAPPEN!
(scrwfile)                EVERYTHING MAY CHANGE IN FUTURE!
(scrwfile)                THERE IS NO SUPPORT, IF YOU USE THIS PACKAGE!
(scrwfile)                Maybe, it would be better not to load this package..

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chapter A.

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[koppor]

Can you run lualatex without any paramters? Then, latex stops at the first error.

The build image reads like that one needs to install additional packages manually:

Note that we build this template using a latex action available on github: https://github.com/latextemplates/scientific-thesis-template/blob/main/.github/workflows/build-with-lualatex.yml

Would it be possible for you to use DANTE e.V.'s Docker Image?