diff --git a/README.md b/README.md
index 0f9c136..0bac217 100644
--- a/README.md
+++ b/README.md
@@ -7,9 +7,9 @@
   - [Reference files and general setup](#reference-files-and-general-setup)
   - [GoT-Splice Pipeline overview](#got-splice-pipeline-overview)
     - [Junction Calling in Single Cells](#junction-calling-in-single-cells)
-    - [Annotation of Intron Junctions](#annotation-of-intron-junctions)
+    - [Annotation of Junctions](#annotation-of-junctions)
     - [Differential Transcript Usage](#differential-transcript-usage)
-      - [Option A: Individual Patient](#option-a-individual-patient)
+      - [Option A: Individual Samples](#option-a-individual-samples)
       - [Option B: Combine Samples](#option-b-combine-samples)
       - [Option C: Within Cell Types/ Clusters](#option-c-within-cell-types-clusters)
   - [Running the full GoT-Splice pipeline](#running-the-full-got-splice-pipeline)