Suggestions

[hukai916]

Hi developers,

Thanks for creating Gotcha, which has been very helpful to our research.

I have a few suggestions regarding the engineering of the tool:

1. Try minimize the use of system(), and instead, use R built-in functions when available.
2. Try use file.path() instead of something like paste0(out,"Split/") when handling paths.

These will help to improve the compatibility of Gotcha across different platforms: I found Gotcha works on Unix system, but fails to run on MacBook. Also, when running GotchaLabeling(), the python env seems not set up correctly and I must manually install missing python libraries.

Best,