Issue with 'anipose calibrate' step during hand tutorial

[annabaines19]

Hi,

I have downloaded and am running the hand tutorial from the anipose website, but I am unable to get the 'anipose calibrate' command to run successfully. All steps prior to this in the tutorial worked fine, utilising the GPU as desired. But at this calibration step, I keep receiving the following error:

(dlcaniposefinal) H:\Anipose tutorial\hand-demo-unfilled>anipose calibrate
Calibrating...
H:\Anipose tutorial\hand-demo-unfilled\2019-08-02
H:\Anipose tutorial\hand-demo-unfilled\2019-08-02\calibration\calibration.toml
H:\Anipose tutorial\hand-demo-unfilled\2019-08-02\calibration\calib-charuco-camA.MOV
0%| | 0/5274 [00:00<?, ?it/s]
Traceback (most recent call last):
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\runpy.py", line 194, in _run_module_as_main
return _run_code(code, main_globals, None,
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\runpy.py", line 87, in run_code
exec(code, run_globals)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\Scripts\anipose.exe_main.py", line 7, in
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\click\core.py", line 1130, in call
return self.main(*args, **kwargs)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\click\core.py", line 1055, in main
rv = self.invoke(ctx)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\click\core.py", line 1657, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\click\core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\click\core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\click\decorators.py", line 84, in new_func
return ctx.invoke(f, obj, *args, **kwargs)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\click\core.py", line 760, in invoke
return __callback(*args, **kwargs)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\anipose\anipose.py", line 118, in calibrate
calibrate_all(config)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\anipose\common.py", line 168, in fun
return process_all(config, process_session, **args)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\anipose\common.py", line 153, in process_all
output[past_folders] = process_session(config, path, **args)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\anipose\calibrate.py", line 192, in process_session
all_rows = cgroup.get_rows_videos(video_list, board)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\aniposelib\cameras.py", line 1580, in get_rows_videos
rows = board.detect_video(vidname, prefix=vnum, progress=verbose)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\aniposelib\boards.py", line 330, in detect_video
corners, ids = self.detect_image(frame)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\aniposelib\boards.py", line 647, in detect_image
corners, ids = self.detect_markers(image, camera, refine=True)
File "C:\Users\nab375\Anaconda3\envs\dlcaniposefinal\lib\site-packages\aniposelib\boards.py", line 631, in detect_markers
aruco.refineDetectedMarkers(gray, self.board, corners, ids,
cv2.error: Unknown C++ exception from OpenCV code

For further information, my conda environment list is:

Name Version Build Channel

absl-py 1.0.0 pypi_0 pypi
anipose 1.0.1 pypi_0 pypi
aniposelib 0.4.3 pypi_0 pypi
apptools 5.2.1 pypi_0 pypi
argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py38h294d835_1 conda-forge
astunparse 1.6.3 pypi_0 pypi
attrs 21.4.0 pyhd8ed1ab_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge
bleach 4.1.0 pyhd8ed1ab_0 conda-forge
blinker 1.6.3 pypi_0 pypi
brotli 1.1.0 pypi_0 pypi
ca-certificates 2021.10.8 h5b45459_0 conda-forge
cachetools 4.2.4 pypi_0 pypi
certifi 2021.10.8 pypi_0 pypi
cffi 1.15.0 py38hd8c33c5_0 conda-forge
charset-normalizer 2.0.10 pypi_0 pypi
click 8.1.3 pypi_0 pypi
colorama 0.4.4 pyh9f0ad1d_0 conda-forge
configobj 5.0.8 pypi_0 pypi
cudatoolkit 11.6.0 hc0ea762_9 conda-forge
cudnn 8.2.1.32 h754d62a_0 conda-forge
cycler 0.11.0 pypi_0 pypi
debugpy 1.5.1 py38h885f38d_0 conda-forge
decorator 4.4.2 pypi_0 pypi
deeplabcut 2.2.0.6 pypi_0 pypi
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
entrypoints 0.3 pyhd8ed1ab_1003 conda-forge
envisage 7.0.3 pypi_0 pypi
ffmpeg 4.3.1 ha925a31_0 conda-forge
filterpy 1.4.5 pypi_0 pypi
flask 3.0.0 pypi_0 pypi
flask-compress 1.14 pypi_0 pypi
flask-ipban 1.1.5 pypi_0 pypi
flatbuffers 2.0 pypi_0 pypi
flit-core 3.6.0 pyhd8ed1ab_0 conda-forge
fonttools 4.28.5 pypi_0 pypi
gast 0.4.0 pypi_0 pypi
google-auth 2.3.3 pypi_0 pypi
google-auth-oauthlib 0.4.6 pypi_0 pypi
google-pasta 0.2.0 pypi_0 pypi
grpcio 1.43.0 pypi_0 pypi
h5py 3.6.0 pypi_0 pypi
icu 68.2 h0e60522_0 conda-forge
idna 3.3 pypi_0 pypi
imageio 2.13.5 pypi_0 pypi
imageio-ffmpeg 0.4.5 pypi_0 pypi
imgaug 0.4.0 pypi_0 pypi
importlib-metadata 4.10.1 py38haa244fe_0 conda-forge
importlib_resources 5.4.0 pyhd8ed1ab_0 conda-forge
ipykernel 6.7.0 py38h595d716_0 conda-forge
ipython 7.31.0 py38haa244fe_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.6.5 pyhd8ed1ab_0 conda-forge
itsdangerous 2.1.2 pypi_0 pypi
jedi 0.18.1 py38haa244fe_0 conda-forge
jinja2 3.1.2 pypi_0 pypi
joblib 1.1.0 pypi_0 pypi
jpeg 9d h8ffe710_0 conda-forge
jsonschema 4.4.0 pyhd8ed1ab_0 conda-forge
jupyter 1.0.0 py38haa244fe_7 conda-forge
jupyter_client 7.1.1 pyhd8ed1ab_0 conda-forge
jupyter_console 6.4.0 pyhd8ed1ab_0 conda-forge
jupyter_core 4.9.1 py38haa244fe_1 conda-forge
jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge
jupyterlab_widgets 1.0.2 pyhd8ed1ab_0 conda-forge
keras 2.7.0 pypi_0 pypi
keras-preprocessing 1.1.2 pypi_0 pypi
kiwisolver 1.3.2 pypi_0 pypi
libclang 12.0.0 pypi_0 pypi
libpng 1.6.37 h1d00b33_2 conda-forge
libsodium 1.0.18 h8d14728_1 conda-forge
libzlib 1.2.11 h8ffe710_1013 conda-forge
llvmlite 0.38.0 pypi_0 pypi
markdown 3.3.6 pypi_0 pypi
markupsafe 2.1.2 pypi_0 pypi
matplotlib 3.5.1 pypi_0 pypi
matplotlib-inline 0.1.3 pyhd8ed1ab_0 conda-forge
mayavi 4.8.0 pypi_0 pypi
mistune 0.8.4 py38h294d835_1005 conda-forge
moviepy 1.0.3 pypi_0 pypi
msgpack 1.0.3 pypi_0 pypi
msgpack-numpy 0.4.7.1 pypi_0 pypi
nb_conda 2.2.1 py38haa244fe_4 conda-forge
nb_conda_kernels 2.3.1 py38haa244fe_1 conda-forge
nbclient 0.5.10 pyhd8ed1ab_1 conda-forge
nbconvert 6.4.0 py38haa244fe_0 conda-forge
nbformat 5.1.3 pyhd8ed1ab_0 conda-forge
nest-asyncio 1.5.4 pyhd8ed1ab_0 conda-forge
networkx 2.6.3 pypi_0 pypi
notebook 6.4.7 pyha770c72_0 conda-forge
numba 0.55.0 pypi_0 pypi
numexpr 2.8.1 pypi_0 pypi
numpy 1.21.5 pypi_0 pypi
oauthlib 3.1.1 pypi_0 pypi
opencv-contrib-python 4.6.0.66 pypi_0 pypi
opencv-python 4.6.0.66 pypi_0 pypi
openssl 1.1.1l h8ffe710_0 conda-forge
opt-einsum 3.3.0 pypi_0 pypi
packaging 21.3 pyhd8ed1ab_0 conda-forge
pandas 1.3.5 pypi_0 pypi
pandoc 2.17.0.1 h8ffe710_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.3 pyhd8ed1ab_0 conda-forge
patsy 0.5.2 pypi_0 pypi
pickleshare 0.7.5 py_1003 conda-forge
pillow 9.0.0 pypi_0 pypi
pip 21.3.1 pyhd8ed1ab_0 conda-forge
proglog 0.1.9 pypi_0 pypi
prometheus_client 0.12.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.24 pyha770c72_0 conda-forge
prompt_toolkit 3.0.24 hd8ed1ab_0 conda-forge
protobuf 3.19.3 pypi_0 pypi
psutil 5.9.0 pypi_0 pypi
pyasn1 0.4.8 pypi_0 pypi
pyasn1-modules 0.2.8 pypi_0 pypi
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pyface 8.0.0 pypi_0 pypi
pygments 2.11.2 pyhd8ed1ab_0 conda-forge
pyparsing 3.0.6 pyhd8ed1ab_0 conda-forge
pyqt 5.12.3 py38haa244fe_8 conda-forge
pyqt-impl 5.12.3 py38h885f38d_8 conda-forge
pyqt5-sip 4.19.18 py38h885f38d_8 conda-forge
pyqtchart 5.12 py38h885f38d_8 conda-forge
pyqtwebengine 5.12.1 py38h885f38d_8 conda-forge
pyrsistent 0.18.1 py38h294d835_0 conda-forge
python 3.8.12 h7840368_2_cpython conda-forge
python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge
python_abi 3.8 2_cp38 conda-forge
pytz 2021.3 pypi_0 pypi
pywavelets 1.2.0 pypi_0 pypi
pywin32 303 py38h294d835_0 conda-forge
pywinpty 1.1.6 py38hd3f51b4_0 conda-forge
pyyaml 6.0 pypi_0 pypi
pyzmq 22.3.0 py38h09162b1_1 conda-forge
qt 5.12.9 h5909a2a_4 conda-forge
qtconsole 5.2.2 pyhd8ed1ab_1 conda-forge
qtconsole-base 5.2.2 pyhd8ed1ab_1 conda-forge
qtpy 2.0.0 pyhd8ed1ab_0 conda-forge
requests 2.27.1 pypi_0 pypi
requests-oauthlib 1.3.0 pypi_0 pypi
rsa 4.8 pypi_0 pypi
ruamel-yaml 0.17.20 pypi_0 pypi
ruamel-yaml-clib 0.2.6 pypi_0 pypi
scikit-image 0.18.1 pypi_0 pypi
scikit-learn 1.0.2 pypi_0 pypi
scikit-video 1.1.11 pypi_0 pypi
scipy 1.7.3 pypi_0 pypi
send2trash 1.8.0 pyhd8ed1ab_0 conda-forge
setuptools 60.5.0 py38haa244fe_0 conda-forge
shapely 1.8.0 pypi_0 pypi
six 1.16.0 pyh6c4a22f_0 conda-forge
sqlite 3.37.0 h8ffe710_0 conda-forge
statsmodels 0.13.1 pypi_0 pypi
tables 3.6.1 pypi_0 pypi
tabulate 0.8.9 pypi_0 pypi
tensorboard 2.7.0 pypi_0 pypi
tensorboard-data-server 0.6.1 pypi_0 pypi
tensorboard-plugin-wit 1.8.1 pypi_0 pypi
tensorflow 2.7.0 pypi_0 pypi
tensorflow-estimator 2.7.0 pypi_0 pypi
tensorflow-io-gcs-filesystem 0.23.1 pypi_0 pypi
tensorpack 0.11 pypi_0 pypi
termcolor 1.1.0 pypi_0 pypi
terminado 0.12.1 py38haa244fe_1 conda-forge
testpath 0.5.0 pyhd8ed1ab_0 conda-forge
tf-slim 1.1.0 pypi_0 pypi
threadpoolctl 3.0.0 pypi_0 pypi
tifffile 2021.11.2 pypi_0 pypi
toml 0.10.2 pypi_0 pypi
tornado 6.1 py38h294d835_2 conda-forge
tqdm 4.62.3 pypi_0 pypi
traitlets 5.1.1 pyhd8ed1ab_0 conda-forge
traits 6.4.3 pypi_0 pypi
traitsui 8.0.0 pypi_0 pypi
typing-extensions 4.0.1 pypi_0 pypi
ucrt 10.0.20348.0 h57928b3_0 conda-forge
urllib3 1.26.8 pypi_0 pypi
vc 14.2 hb210afc_6 conda-forge
vs2015_runtime 14.29.30037 h902a5da_6 conda-forge
vtk 9.0.0 pypi_0 pypi
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
werkzeug 3.0.1 pypi_0 pypi
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
widgetsnbextension 3.5.2 py38haa244fe_1 conda-forge
winpty 0.4.3 4 conda-forge
wrapt 1.13.3 pypi_0 pypi
wxpython 4.0.7.post2 pypi_0 pypi
zeromq 4.3.4 h0e60522_1 conda-forge
zipp 3.7.0 pyhd8ed1ab_0 conda-forge
zlib 1.2.11 h8ffe710_1013 conda-forge

If anyone has any suggestions for how to fix this error, it would be much appreciated.

Thanks,
Anna