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Segment Anything in Qupath #14

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mocherry opened this issue Mar 5, 2024 · 0 comments
Open

Segment Anything in Qupath #14

mocherry opened this issue Mar 5, 2024 · 0 comments

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@mocherry
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mocherry commented Mar 5, 2024

Hi ,

I just came across "Segment Anything" in Qupath.
Now, this seems to be a great tool. Segmenting mitochondria in EM images works like a dream. Now I have a question about usage:
if what is detected does not fit completely or adjacent parts are also detected: is there a way to remove oversegmented parts? In a video of micro-SAM I have seen this to be possible. Alas, I have not yet managed to install micro-SAM and Napari is kind of new to me, so I expect that it takes a while to learn it.

Thanks and best,
Matthias
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@mocherry