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CRC_TCell_Analysis

Description

This repository contains the code for analyzing colorectal cancer T-cell data using Seurat and ggplot2. The analysis includes visualization and comparison of different conditions and T-cell annotations.

Getting Started

Dependencies

To use this project, you need to have R and the following R packages installed:

install.packages(c("Seurat", "ggplot2", "dplyr"))

Installing

Clone the repository to your local machine and navigate to the project directory:

git clone https://github.com/kreatorkat2004/CRC_TCell_Analysis.git
cd CRC_TCell_Analysis

Executing program

To run the main analysis script, open R and execute the following command:

source("scripts/analysis.R")

This will load the necessary datasets, preprocess the data, and generate the plots.

Help

For common issues, ensure that all required packages are installed and that the dataset files are correctly placed in the project directory.

# Example command to check for missing packages
if (!require("Seurat")) install.packages("Seurat")

Version History

  • 0.1
    • Initial Release

License

This project is licensed under the MIT License - see the LICENSE.md file for details.

Acknowledgments

  • Researchers and analysts who have contributed to the field of T-cell analysis.
  • Open-source community for the R packages used in this analysis.
  • Developers of Seurat and ggplot2 for their powerful tools in data visualization and analysis.