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regex-pubmunch.txt
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regex-pubmunch.txt
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seqType mutType isCoding patName pat
dna sub True c.123T>A {sep}c\.{pos}{origDna}{rightArrow}{mutDna}
dna sub True somename substitution of {origDna} by {mutDna} at nucleotide position [^0-9]{{0,3}}{pos}
dna sub True 859G>A {sep}{pos}{origDna}{rightArrow}{mutDna}
#dna sub True 2521del5insT {pos}del{delLen}ins{mutDna}
dna del True c.123delT {sep}c\.{pos}del{origDnas}
dna del True c.123_125delAT {sep}c\.{fromPos}_{toPos}del{origDnas}
dna del True c.123-125delAT {sep}c\.{fromPos}-{toPos}del{origDnas}
dna del True 10083731 deletion of nt{pos}{origDnas}
dna del True 6174delT {sep}{pos}del{origDnas}
dna ins True 5382insC {sep}{pos}ins{origDnas}
dna ins True c.123_124insGC {sep}c\.{fromPos}_{toPos}ins{dnas}
dna ins True c.123-124insGC {sep}c\.{fromPos}-{toPos}ins{dnas}
dna dup True c.123dupA {sep}c\.{pos}dup{origDna}
dna dup True c.123_125dupAT {sep}c\.{fromPos}_{toPos}dup{origDnas}
dna dup True c.123-125dupAT {sep}c\.{fromPos}-{toPos}dup{origDnas}
dna sub False c.123+2A>T {sep}c\.{pos}{plusMinus}{offset}{origDna}{rightArrow}{mutDna}
prot sub True M1775R {sep}{origAaShort}{pos}{mutAaShort}
prot sub True Met1775Arg {sep}{origAaLong}{pos}{mutAaLong}
prot sub True p.M1775R {sep}p\.\(?{origAaShort}{pos}{mutAaShort}{fs}
prot sub True p.Met1775Arg {sep}p\.\(?{origAaLong}{pos}{mutAaLong}{fs}
#prot sub True 11005141 {sep}{origAaLong}{rightArrow}{mutAaLong}
prot del True p.M1775del {sep}p\.{origAaShort}{pos}del
prot del True p.Met1775del {sep}p\.{origAaLong}{pos}del
prot del True p.1775_1776delM {sep}p\.{fromPos}_{toPos}del{origAasShort}
prot del True p.1775-1776delM {sep}p\.{fromPos}-{toPos}del{origAasShort}
prot del True p.1775_1776delMet {sep}p\.{fromPos}_{toPos}del{origAasLong}
prot del True p.1775-1776delMet {sep}p\.{fromPos}-{toPos}del{origAasLong}
prot ins True p.1775_1776dinsR {sep}p\.{fromPos}_{toPos}ins{mutAasShort}
prot ins True p.1775-1776dinsR {sep}p\.{fromPos}-{toPos}ins{mutAasShort}
prot ins True p.1775_1775insArg {sep}p\.{fromPos}_{toPos}ins{mutAasLong}
prot ins True p.1775-1775insArg {sep}p\.{fromPos}-{toPos}ins{mutAasLong}
intron sub False IVS5+3A>G IVS{pos}{plusMinus}{offset}{origDna}{rightArrow}{mutDna}
intron del False IVS6-2delA IVS{pos}{plusMinus}{offset}del{origDna}
dbSnp dbSnp True rs/SNP+number {sep}(SNP|dbSNP|rs|Rs|RefSNP|refSNP)( |-| no.| no| No.| ID|ID:| #|#| number)?[ ]?(?P<rsId>[0-9]{{4,19}})