Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Support custom scoring matrices #2

Open
GabeAl opened this issue Feb 4, 2017 · 0 comments
Open

Support custom scoring matrices #2

GabeAl opened this issue Feb 4, 2017 · 0 comments
Milestone

Comments

@GabeAl
Copy link
Collaborator

GabeAl commented Feb 4, 2017

Currently uses its (exceptionally good!) dual-objective scoring metric:

  • Find all lowest-ED paths, including all insertions, deletions, and substitutions
  • Among all possibilities, find the best BLAST ID.
  • (Can also do "plus" mode where it optimizes BLAST ID first, but despite a few alignments having higher ID, they introduce so many gaps that the edit distance goes sky high, which is not reflective of biology!)

This would only be used in protein alignments or other alphabets (english text...)

@GabeAl GabeAl added this to the 2.0 milestone Feb 4, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant