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Support custom scoring matrices #2

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GabeAl opened this issue Feb 4, 2017 · 0 comments

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GabeAl commented Feb 4, 2017

Currently uses its (exceptionally good!) dual-objective scoring metric:

Find all lowest-ED paths, including all insertions, deletions, and substitutions
Among all possibilities, find the best BLAST ID.
(Can also do "plus" mode where it optimizes BLAST ID first, but despite a few alignments having higher ID, they introduce so many gaps that the edit distance goes sky high, which is not reflective of biology!)

This would only be used in protein alignments or other alphabets (english text...)

GabeAl added the enhancement label

GabeAl added this to the 2.0 milestone

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