-
Notifications
You must be signed in to change notification settings - Fork 1
/
environment.ubuntu.yml
128 lines (128 loc) · 2.6 KB
/
environment.ubuntu.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
name: kipoi-veff2
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- snakemake
- bedtools=2.30.0
- bzip2=1.0.8
- c-ares=1.18.1
- ca-certificates=2021.10.8
- click=8.1.3
- coloredlogs=15.0.1
- cython=0.29.23
- cyvcf2=0.30.15
- htslib=1.15.1
- humanfriendly=10.0
- importlib-metadata=4.11.3
- keyutils=1.6.1
- krb5=1.19.3
- ld_impl_linux-64=2.36.1
- libblas=3.9.0
- libcblas=3.9.0
- libcurl=7.83.0
- libdeflate=1.10
- libedit=3.1.20191231
- libev=4.33
- libffi=3.4.2
- libgcc-ng=11.2.0
- libgfortran-ng=11.2.0
- libgfortran5=11.2.0
- libgomp=11.2.0
- liblapack=3.9.0
- libnghttp2=1.47.0
- libnsl=2.0.0
- libopenblas=0.3.20
- libssh2=1.10.0
- libstdcxx-ng=11.2.0
- libzlib=1.2.11
- ncurses=6.3
- openssl=1.1.1n
- pip=20.2.4
- python=3.7.12
- python_abi=3.7
- readline=8.1
- setuptools=62.1.0
- sqlite=3.38.3
- tk=8.6.12
- wheel=0.37.1
- xz=5.2.5
- zipp=3.8.0
- zlib=1.2.11
- tensorflow=1.13.1
- pybedtools
- numpy=1.18.5
- pip:
- absl-py==1.0.0
- argcomplete==2.0.0
- argh==0.26.2
- arrow==1.2.2
- astor==0.8.1
- attrs==21.4.0
- binaryornot==0.4.4
- certifi==2021.10.8
- chardet==4.0.0
- charset-normalizer==2.0.12
- colorlog==6.6.0
- cookiecutter==1.7.3
- dataclasses==0.6
- deprecation==2.1.0
- future==0.18.2
- gast==0.5.3
- gffutils==0.10.1
- grpcio==1.46.0
- h5py==2.10.0
- idna==3.3
- iniconfig==1.1.1
- jinja2==3.1.2
- jinja2-time==0.2.0
- keras==2.2.4
- keras-applications==1.0.8
- keras-preprocessing==1.1.2
- kipoi==0.8.2
- kipoi-conda==0.3.1
- kipoi-utils==0.7.6
- kipoiseq==0.7.1
- markdown==3.3.6
- markupsafe==2.1.1
- mmsplice==2.2.0
- mock==4.0.3
- natsort==8.1.0
- ncls==0.0.64
- packaging==21.3
- pandas==1.3.5
- pluggy==1.0.0
- poyo==0.5.0
- protobuf==3.20.1
- py==1.11.0
- pyfaidx==0.6.4
- pyparsing==3.0.8
- pyranges==0.0.115
- pyrle==0.0.34
- pysam==0.16.0.1
- pytest==7.1.2
- python-dateutil==2.8.2
- python-slugify==6.1.2
- pytz==2022.1
- pyyaml==6.0
- related==0.7.2
- requests==2.27.1
- scikit-learn==0.19.2
- scipy==1.5.4
- simplejson==3.17.6
- six==1.16.0
- sorted-nearest==0.0.33
- tabulate==0.8.9
- termcolor==1.1.0
- text-unidecode==1.3
- tinydb==4.7.0
- tomli==2.0.1
- torch==1.11.0
- tqdm==4.64.0
- typing-extensions==4.1.1
- urllib3==1.26.9
- werkzeug==2.1.2
prefix: /opt/conda/envs/kipoi-veff2