diff --git a/README.md b/README.md index 058e4f0..077c796 100644 --- a/README.md +++ b/README.md @@ -1,20 +1,20 @@ -# Snakemake workflow: zonaconn-smk -Snakemake workflow for diffusion and functional connectivity with -the zona incerta. +# Snakemake workflow: subcorticalparc-smk +Snakemake workflow for identifying structural and functional connectivity with +regions/structures of interest. _This workflow is currently customized to run with data from the HCP1200 7T_ ## Description Using the HCP-MMP cortical parcellation (180 regions, left/right sym labels) -as targets and performs probabilistic tracking from the zona incerta seed in -each subject's native space. The connectivity data from seed voxels are brought -into the template space to perform spectral clustering on the concatenated -feature vectors to parcellate into `k` regions. +as targets and performs probabilistic tracking from the region / structure of +interest seed in each subject's native space. The connectivity data from seed +voxels are brought into the template space to perform spectral clustering on +the concatenated feature vectors to parcellate into `k` regions. ### Inputs -- Probabilistic segmentation(s) as 3D NIFTI for ZI on a single MNI template -space +- Probabilistic segmentation(s) as 3D NIFTI for region/structure of interest +on a single MNI template space - participants.tsv with target subject IDs - For each target subject: - Freesurfer processed data diff --git a/pyproject.toml b/pyproject.toml index df4df45..1383b40 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "zonaconn-smk" -version = "0.1.0-pre-1" +version = "0.1.0" description = "Snakemake workflow to identify connectivity to the zona incerta" authors = [ "Ali Khan",