diff --git a/_data/publications/publications.csv b/_data/publications/publications.csv index 26dfaef..032de7e 100644 --- a/_data/publications/publications.csv +++ b/_data/publications/publications.csv @@ -1,4 +1,6 @@ pmid,pmcid,doi,title,authors,year,month,day,journal,volume,issue,pages +38839341,PMC11154849,10.1523/JNEUROSCI.1705-23.2024,Diffusion MRI of the Hippocampus,"['Karat BG', 'Kohler S', 'Khan AR']",2024,6,5,J Neurosci,44,23, +38822981,,10.1007/s11548-024-03186-z,MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs,"['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']",2024,6,1,Int J Comput Assist Radiol Surg,,, 38446857,,10.1073/pnas.2310044121,"Insights into hippocampal perfusion using high-resolution, multi-modal 7T MRI","['Haast RAM', 'Kashyap S', 'Ivanov D', 'Yousif MD', 'DeKraker J', 'Poser BA', 'Khan AR']",2024,3,12,Proc Natl Acad Sci U S A,121,11.0,e2310044121 38377722,,10.1016/j.nicl.2024.103577,Increased iron in the substantia nigra pars compacta identifies patients with early Parkinson'sdisease: A 3T and 7T MRI study,"['Alushaj E', 'Handfield-Jones N', 'Kuurstra A', 'Morava A', 'Menon RS', 'Owen AM', 'Sharma M', 'Khan AR', 'MacDonald PA']",2024,2,17,Neuroimage Clin,41,,103577 38263439,PMC10806185,10.1038/s41598-024-52613-3,Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue,"['Shao Z', 'Buchanan LB', 'Zuanazzi D', 'Khan YN', 'Khan AR', 'Prodger JL']",2024,1,23,Sci Rep,14,1.0,1985 diff --git a/get_publications.ipynb b/get_publications.ipynb index 5d5ae59..9b74e9d 100644 --- a/get_publications.ipynb +++ b/get_publications.ipynb @@ -5,10 +5,10 @@ "id": "74557173", "metadata": { "papermill": { - "duration": 0.002403, - "end_time": "2024-06-01T05:12:46.553604", + "duration": 0.002676, + "end_time": "2024-07-01T05:12:33.884155", "exception": false, - "start_time": "2024-06-01T05:12:46.551201", + "start_time": "2024-07-01T05:12:33.881479", "status": "completed" }, "tags": [] @@ -37,16 +37,16 @@ "id": "e22f3858", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:46.558800Z", - "iopub.status.busy": "2024-06-01T05:12:46.558233Z", - "iopub.status.idle": "2024-06-01T05:12:47.785996Z", - "shell.execute_reply": "2024-06-01T05:12:47.785266Z" + "iopub.execute_input": "2024-07-01T05:12:33.889552Z", + "iopub.status.busy": "2024-07-01T05:12:33.889101Z", + "iopub.status.idle": "2024-07-01T05:12:35.117246Z", + "shell.execute_reply": "2024-07-01T05:12:35.116505Z" }, "papermill": { - "duration": 1.232276, - "end_time": "2024-06-01T05:12:47.787812", + "duration": 1.232882, + "end_time": "2024-07-01T05:12:35.119093", "exception": false, - "start_time": "2024-06-01T05:12:46.555536", + "start_time": "2024-07-01T05:12:33.886211", "status": "completed" }, "tags": [] @@ -67,10 +67,10 @@ "id": "d526e19d", "metadata": { "papermill": { - "duration": 0.001733, - "end_time": "2024-06-01T05:12:47.791557", + "duration": 0.001682, + "end_time": "2024-07-01T05:12:35.122731", "exception": false, - "start_time": "2024-06-01T05:12:47.789824", + "start_time": "2024-07-01T05:12:35.121049", "status": "completed" }, "tags": [] @@ -85,16 +85,16 @@ "id": "5d9095c2", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.796168Z", - "iopub.status.busy": "2024-06-01T05:12:47.795696Z", - "iopub.status.idle": "2024-06-01T05:12:47.802685Z", - "shell.execute_reply": "2024-06-01T05:12:47.802031Z" + "iopub.execute_input": "2024-07-01T05:12:35.127614Z", + "iopub.status.busy": "2024-07-01T05:12:35.126958Z", + "iopub.status.idle": "2024-07-01T05:12:35.134108Z", + "shell.execute_reply": "2024-07-01T05:12:35.133582Z" }, "papermill": { - "duration": 0.011015, - "end_time": "2024-06-01T05:12:47.804184", + "duration": 0.01098, + "end_time": "2024-07-01T05:12:35.135371", "exception": false, - "start_time": "2024-06-01T05:12:47.793169", + "start_time": "2024-07-01T05:12:35.124391", "status": "completed" }, "tags": [] @@ -116,10 +116,10 @@ "id": "da017a87", "metadata": { "papermill": { - "duration": 0.001644, - "end_time": "2024-06-01T05:12:47.807482", + "duration": 0.001682, + "end_time": "2024-07-01T05:12:35.138733", "exception": false, - "start_time": "2024-06-01T05:12:47.805838", + "start_time": "2024-07-01T05:12:35.137051", "status": "completed" }, "tags": [] @@ -134,16 +134,16 @@ "id": "700613de", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.811879Z", - "iopub.status.busy": "2024-06-01T05:12:47.811531Z", - "iopub.status.idle": "2024-06-01T05:12:47.815022Z", - "shell.execute_reply": "2024-06-01T05:12:47.814307Z" + "iopub.execute_input": "2024-07-01T05:12:35.143202Z", + "iopub.status.busy": "2024-07-01T05:12:35.142767Z", + "iopub.status.idle": "2024-07-01T05:12:35.146853Z", + "shell.execute_reply": "2024-07-01T05:12:35.146057Z" }, "papermill": { - "duration": 0.007234, - "end_time": "2024-06-01T05:12:47.816359", + "duration": 0.007797, + "end_time": "2024-07-01T05:12:35.148197", "exception": false, - "start_time": "2024-06-01T05:12:47.809125", + "start_time": "2024-07-01T05:12:35.140400", "status": "completed" }, "tags": [] @@ -165,16 +165,16 @@ "id": "2ad1de07", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.820796Z", - "iopub.status.busy": "2024-06-01T05:12:47.820442Z", - "iopub.status.idle": "2024-06-01T05:12:50.394770Z", - "shell.execute_reply": "2024-06-01T05:12:50.394051Z" + "iopub.execute_input": "2024-07-01T05:12:35.152795Z", + "iopub.status.busy": "2024-07-01T05:12:35.152379Z", + "iopub.status.idle": "2024-07-01T05:12:37.756334Z", + "shell.execute_reply": "2024-07-01T05:12:37.755633Z" }, "papermill": { - "duration": 2.578186, - "end_time": "2024-06-01T05:12:50.396207", + "duration": 2.608028, + "end_time": "2024-07-01T05:12:37.757907", "exception": false, - "start_time": "2024-06-01T05:12:47.818021", + "start_time": "2024-07-01T05:12:35.149879", "status": "completed" }, "scrolled": true, @@ -187,7 +187,7 @@ "text": [ "Total number of publications containing \"Khan AR\"[AUTH] AND (\"2015/01/01\"[PDAT] : \"3000/12/31\"[PDAT]) AND\n", " (\"Western University\"[AFFL] OR \"University of Western Ontario\"[AFFL] OR\n", - " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 77\n" + " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 79\n" ] }, { @@ -201,7 +201,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/tmp/ipykernel_1999/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + "/tmp/ipykernel_1996/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", " df = df_old.append(new_pubs)\n" ] } @@ -275,16 +275,16 @@ "id": "70df731e", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:50.401275Z", - "iopub.status.busy": "2024-06-01T05:12:50.401038Z", - "iopub.status.idle": "2024-06-01T05:12:50.407504Z", - "shell.execute_reply": "2024-06-01T05:12:50.406683Z" + "iopub.execute_input": "2024-07-01T05:12:37.762988Z", + "iopub.status.busy": "2024-07-01T05:12:37.762579Z", + "iopub.status.idle": "2024-07-01T05:12:37.769659Z", + "shell.execute_reply": "2024-07-01T05:12:37.768858Z" }, "papermill": { - "duration": 0.010465, - "end_time": "2024-06-01T05:12:50.408814", + "duration": 0.011006, + "end_time": "2024-07-01T05:12:37.770998", "exception": false, - "start_time": "2024-06-01T05:12:50.398349", + "start_time": "2024-07-01T05:12:37.759992", "status": "completed" }, "tags": [] @@ -294,10 +294,18 @@ "name": "stdout", "output_type": "stream", "text": [ - "71 total articles found.\n", - "0 new articles found.\n", + "73 total articles found.\n", + "2 new articles found.\n", "\n", - "New publications found:\n" + "New publications found:\n", + "Title: Diffusion MRI of the Hippocampus (J Neurosci)\n", + "Authors: ['Karat BG', 'Kohler S', 'Khan AR']\n", + "Journal (Date): J Neurosci (6/5/2024)\n", + "\n", + "Title: MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs (Int J Comput Assist Radiol Surg)\n", + "Authors: ['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']\n", + "Journal (Date): Int J Comput Assist Radiol Surg (6/1/2024)\n", + "\n" ] } ], @@ -323,16 +331,16 @@ "id": "e76e9b21", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:50.413501Z", - "iopub.status.busy": "2024-06-01T05:12:50.413301Z", - "iopub.status.idle": "2024-06-01T05:12:50.427756Z", - "shell.execute_reply": "2024-06-01T05:12:50.427160Z" + "iopub.execute_input": "2024-07-01T05:12:37.776265Z", + "iopub.status.busy": "2024-07-01T05:12:37.775684Z", + "iopub.status.idle": "2024-07-01T05:12:37.793744Z", + "shell.execute_reply": "2024-07-01T05:12:37.793105Z" }, "papermill": { - "duration": 0.018351, - "end_time": "2024-06-01T05:12:50.429074", + "duration": 0.022067, + "end_time": "2024-07-01T05:12:37.795063", "exception": false, - "start_time": "2024-06-01T05:12:50.410723", + "start_time": "2024-07-01T05:12:37.772996", "status": "completed" }, "tags": [] @@ -374,14 +382,56 @@ " \n", " \n", " \n", + " \n", + " 0\n", + " 38839341\n", + " PMC11154849\n", + " 10.1523/JNEUROSCI.1705-23.2024\n", + " Diffusion MRI of the Hippocampus\n", + " [Karat BG, Kohler S, Khan AR]\n", + " 2024\n", + " 6\n", + " 5\n", + " J Neurosci\n", + " 44\n", + " 23\n", + " \n", + " \n", + " \n", + " 1\n", + " 38822981\n", + " \n", + " 10.1007/s11548-024-03186-z\n", + " MRI-degad: toward accurate conversion of gadol...\n", + " [Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ...\n", + " 2024\n", + " 6\n", + " 1\n", + " Int J Comput Assist Radiol Surg\n", + " \n", + " \n", + " \n", + " \n", " \n", "\n", "" ], "text/plain": [ - "Empty DataFrame\n", - "Columns: [pmid, pmcid, doi, title, authors, year, month, day, journal, volume, issue, pages]\n", - "Index: []" + " pmid pmcid doi \\\n", + "0 38839341 PMC11154849 10.1523/JNEUROSCI.1705-23.2024 \n", + "1 38822981 10.1007/s11548-024-03186-z \n", + "\n", + " title \\\n", + "0 Diffusion MRI of the Hippocampus \n", + "1 MRI-degad: toward accurate conversion of gadol... \n", + "\n", + " authors year month day \\\n", + "0 [Karat BG, Kohler S, Khan AR] 2024 6 5 \n", + "1 [Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ... 2024 6 1 \n", + "\n", + " journal volume issue pages \n", + "0 J Neurosci 44 23 \n", + "1 Int J Comput Assist Radiol Surg " ] }, "execution_count": 6, @@ -416,14 +466,14 @@ }, "papermill": { "default_parameters": {}, - "duration": 4.920022, - "end_time": "2024-06-01T05:12:50.648248", + "duration": 4.958753, + "end_time": "2024-07-01T05:12:38.015018", "environment_variables": {}, "exception": null, "input_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb", "output_path": "/home/runner/work/khanlab.github.io/khanlab.github.io/get_publications.ipynb", "parameters": {}, - "start_time": "2024-06-01T05:12:45.728226", + "start_time": "2024-07-01T05:12:33.056265", "version": "2.3.3" }, "vscode": {