diff --git a/_data/publications/publications.csv b/_data/publications/publications.csv index 26dfaef..f753cc7 100644 --- a/_data/publications/publications.csv +++ b/_data/publications/publications.csv @@ -1,8 +1,12 @@ pmid,pmcid,doi,title,authors,year,month,day,journal,volume,issue,pages +38822981,,10.1007/s11548-024-03186-z,MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs,"['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']",2024,7,1,Int J Comput Assist Radiol Surg,19,7,1469-1472 +38951528,PMC11217278,10.1038/s41531-024-00731-0,Increased mean diffusivity of the caudal motor SNc identifies patients with REM sleep behaviour disorder and Parkinson's disease,"['Alushaj E', 'Hemachandra D', 'Ganjavi H', 'Seergobin KN', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']",2024,6,29,NPJ Parkinsons Dis,10,1,128 +38839341,PMC11154849,10.1523/JNEUROSCI.1705-23.2024,Diffusion MRI of the Hippocampus,"['Karat BG', 'Kohler S', 'Khan AR']",2024,6,5,J Neurosci,44,23, 38446857,,10.1073/pnas.2310044121,"Insights into hippocampal perfusion using high-resolution, multi-modal 7T MRI","['Haast RAM', 'Kashyap S', 'Ivanov D', 'Yousif MD', 'DeKraker J', 'Poser BA', 'Khan AR']",2024,3,12,Proc Natl Acad Sci U S A,121,11.0,e2310044121 38377722,,10.1016/j.nicl.2024.103577,Increased iron in the substantia nigra pars compacta identifies patients with early Parkinson'sdisease: A 3T and 7T MRI study,"['Alushaj E', 'Handfield-Jones N', 'Kuurstra A', 'Morava A', 'Menon RS', 'Owen AM', 'Sharma M', 'Khan AR', 'MacDonald PA']",2024,2,17,Neuroimage Clin,41,,103577 38263439,PMC10806185,10.1038/s41598-024-52613-3,Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue,"['Shao Z', 'Buchanan LB', 'Zuanazzi D', 'Khan YN', 'Khan AR', 'Prodger JL']",2024,1,23,Sci Rep,14,1.0,1985 38235918,,10.1002/jor.25785,Assessing brain integrity in patients with long-term and well-functioning metal-based hip implants,"['Taleb S', 'Varela-Mattatall G', 'Allen A', 'Haast R', 'Khan AR', 'Kalia V', 'Howard JL', 'MacDonald SJ', 'Menon RS', 'Lanting BA', 'Teeter MG']",2024,1,18,J Orthop Res,,, +39144115,PMC11207789,10.1093/schizbullopen/sgae010,Cortical Network Disruption Is Minimal in Early Stages of Psychosis,"['Van Dyken PC', 'MacKinley M', 'Khan AR', 'Palaniyappan L']",2024,1,1,Schizophr Bull Open,5,1,sgae010 37956092,PMC10642966,10.7554/eLife.88404,Evaluation of surface-based hippocampal registration using ground-truth subfield definitions,"['DeKraker J', 'Palomero-Gallagher N', 'Kedo O', 'Ladbon-Bernasconi N', 'Muenzing SEA', 'Axer M', 'Amunts K', 'Khan AR', 'Bernhardt BC', 'Evans AC']",2023,11,13,Elife,12,, 37864501,,10.1111/jnc.15990,Focal acetylcholinergic modulation of the human midcingulo-insular network during attention: Meta-analytic neuroimaging and behavioral evidence,"['Chakraborty S', 'Lee SK', 'Arnold SM', 'Haast RAM', 'Khan AR', 'Schmitz TW']",2023,10,21,J Neurochem,,, 37663773,PMC10474320,10.1016/j.dib.2023.109513,A population-averaged structural connectomic brain atlas dataset from 422 HCP-aging subjects,"['Xiao Y', 'Gilmore G', 'Kai J', 'Lau JC', 'Peters T', 'Khan AR']",2023,10,1,Data Brief,50,,109513 diff --git a/get_publications.ipynb b/get_publications.ipynb index 5d5ae59..1a479be 100644 --- a/get_publications.ipynb +++ b/get_publications.ipynb @@ -5,10 +5,10 @@ "id": "74557173", "metadata": { "papermill": { - "duration": 0.002403, - "end_time": "2024-06-01T05:12:46.553604", + "duration": 0.002272, + "end_time": "2024-09-01T05:14:08.281694", "exception": false, - "start_time": "2024-06-01T05:12:46.551201", + "start_time": "2024-09-01T05:14:08.279422", "status": "completed" }, "tags": [] @@ -37,16 +37,16 @@ "id": "e22f3858", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:46.558800Z", - "iopub.status.busy": "2024-06-01T05:12:46.558233Z", - "iopub.status.idle": "2024-06-01T05:12:47.785996Z", - "shell.execute_reply": "2024-06-01T05:12:47.785266Z" + "iopub.execute_input": "2024-09-01T05:14:08.286167Z", + "iopub.status.busy": "2024-09-01T05:14:08.285918Z", + "iopub.status.idle": "2024-09-01T05:14:09.436897Z", + "shell.execute_reply": "2024-09-01T05:14:09.436194Z" }, "papermill": { - "duration": 1.232276, - "end_time": "2024-06-01T05:12:47.787812", + "duration": 1.155319, + "end_time": "2024-09-01T05:14:09.438795", "exception": false, - "start_time": "2024-06-01T05:12:46.555536", + "start_time": "2024-09-01T05:14:08.283476", "status": "completed" }, "tags": [] @@ -67,10 +67,10 @@ "id": "d526e19d", "metadata": { "papermill": { - "duration": 0.001733, - "end_time": "2024-06-01T05:12:47.791557", + "duration": 0.001675, + "end_time": "2024-09-01T05:14:09.442440", "exception": false, - "start_time": "2024-06-01T05:12:47.789824", + "start_time": "2024-09-01T05:14:09.440765", "status": "completed" }, "tags": [] @@ -85,16 +85,16 @@ "id": "5d9095c2", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.796168Z", - "iopub.status.busy": "2024-06-01T05:12:47.795696Z", - "iopub.status.idle": "2024-06-01T05:12:47.802685Z", - "shell.execute_reply": "2024-06-01T05:12:47.802031Z" + "iopub.execute_input": "2024-09-01T05:14:09.446829Z", + "iopub.status.busy": "2024-09-01T05:14:09.446537Z", + "iopub.status.idle": "2024-09-01T05:14:09.453376Z", + "shell.execute_reply": "2024-09-01T05:14:09.452748Z" }, "papermill": { - "duration": 0.011015, - "end_time": "2024-06-01T05:12:47.804184", + "duration": 0.0108, + "end_time": "2024-09-01T05:14:09.454865", "exception": false, - "start_time": "2024-06-01T05:12:47.793169", + "start_time": "2024-09-01T05:14:09.444065", "status": "completed" }, "tags": [] @@ -116,10 +116,10 @@ "id": "da017a87", "metadata": { "papermill": { - "duration": 0.001644, - "end_time": "2024-06-01T05:12:47.807482", + "duration": 0.001581, + "end_time": "2024-09-01T05:14:09.458187", "exception": false, - "start_time": "2024-06-01T05:12:47.805838", + "start_time": "2024-09-01T05:14:09.456606", "status": "completed" }, "tags": [] @@ -134,16 +134,16 @@ "id": "700613de", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.811879Z", - "iopub.status.busy": "2024-06-01T05:12:47.811531Z", - "iopub.status.idle": "2024-06-01T05:12:47.815022Z", - "shell.execute_reply": "2024-06-01T05:12:47.814307Z" + "iopub.execute_input": "2024-09-01T05:14:09.462570Z", + "iopub.status.busy": "2024-09-01T05:14:09.462173Z", + "iopub.status.idle": "2024-09-01T05:14:09.465700Z", + "shell.execute_reply": "2024-09-01T05:14:09.464995Z" }, "papermill": { - "duration": 0.007234, - "end_time": "2024-06-01T05:12:47.816359", + "duration": 0.007191, + "end_time": "2024-09-01T05:14:09.467021", "exception": false, - "start_time": "2024-06-01T05:12:47.809125", + "start_time": "2024-09-01T05:14:09.459830", "status": "completed" }, "tags": [] @@ -165,16 +165,16 @@ "id": "2ad1de07", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:47.820796Z", - "iopub.status.busy": "2024-06-01T05:12:47.820442Z", - "iopub.status.idle": "2024-06-01T05:12:50.394770Z", - "shell.execute_reply": "2024-06-01T05:12:50.394051Z" + "iopub.execute_input": "2024-09-01T05:14:09.471408Z", + "iopub.status.busy": "2024-09-01T05:14:09.471020Z", + "iopub.status.idle": "2024-09-01T05:14:11.516164Z", + "shell.execute_reply": "2024-09-01T05:14:11.515505Z" }, "papermill": { - "duration": 2.578186, - "end_time": "2024-06-01T05:12:50.396207", + "duration": 2.04893, + "end_time": "2024-09-01T05:14:11.517622", "exception": false, - "start_time": "2024-06-01T05:12:47.818021", + "start_time": "2024-09-01T05:14:09.468692", "status": "completed" }, "scrolled": true, @@ -187,7 +187,7 @@ "text": [ "Total number of publications containing \"Khan AR\"[AUTH] AND (\"2015/01/01\"[PDAT] : \"3000/12/31\"[PDAT]) AND\n", " (\"Western University\"[AFFL] OR \"University of Western Ontario\"[AFFL] OR\n", - " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 77\n" + " \"Brain and Mind Institute\"[AFFL] OR \"Robarts Research Institute\"[AFFL]): 81\n" ] }, { @@ -201,7 +201,7 @@ "name": "stderr", "output_type": "stream", "text": [ - "/tmp/ipykernel_1999/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", + "/tmp/ipykernel_1963/990535001.py:54: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.\n", " df = df_old.append(new_pubs)\n" ] } @@ -275,16 +275,16 @@ "id": "70df731e", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:50.401275Z", - "iopub.status.busy": "2024-06-01T05:12:50.401038Z", - "iopub.status.idle": "2024-06-01T05:12:50.407504Z", - "shell.execute_reply": "2024-06-01T05:12:50.406683Z" + "iopub.execute_input": "2024-09-01T05:14:11.522702Z", + "iopub.status.busy": "2024-09-01T05:14:11.522326Z", + "iopub.status.idle": "2024-09-01T05:14:11.529175Z", + "shell.execute_reply": "2024-09-01T05:14:11.528337Z" }, "papermill": { - "duration": 0.010465, - "end_time": "2024-06-01T05:12:50.408814", + "duration": 0.010833, + "end_time": "2024-09-01T05:14:11.530554", "exception": false, - "start_time": "2024-06-01T05:12:50.398349", + "start_time": "2024-09-01T05:14:11.519721", "status": "completed" }, "tags": [] @@ -294,10 +294,26 @@ "name": "stdout", "output_type": "stream", "text": [ - "71 total articles found.\n", - "0 new articles found.\n", + "75 total articles found.\n", + "4 new articles found.\n", "\n", - "New publications found:\n" + "New publications found:\n", + "Title: Cortical Network Disruption Is Minimal in Early Stages of Psychosis (Schizophr Bull Open)\n", + "Authors: ['Van Dyken PC', 'MacKinley M', 'Khan AR', 'Palaniyappan L']\n", + "Journal (Date): Schizophr Bull Open (1/1/2024)\n", + "\n", + "Title: Increased mean diffusivity of the caudal motor SNc identifies patients with REM sleep behaviour disorder and Parkinson's disease (NPJ Parkinsons Dis)\n", + "Authors: ['Alushaj E', 'Hemachandra D', 'Ganjavi H', 'Seergobin KN', 'Sharma M', 'Kashgari A', 'Barr J', 'Reisman W', 'Khan AR', 'MacDonald PA']\n", + "Journal (Date): NPJ Parkinsons Dis (6/29/2024)\n", + "\n", + "Title: Diffusion MRI of the Hippocampus (J Neurosci)\n", + "Authors: ['Karat BG', 'Kohler S', 'Khan AR']\n", + "Journal (Date): J Neurosci (6/5/2024)\n", + "\n", + "Title: MRI-degad: toward accurate conversion of gadolinium-enhanced T1w MRIs to non-contrast-enhanced scans using CNNs (Int J Comput Assist Radiol Surg)\n", + "Authors: ['Ogunsanya F', 'Taha A', 'Gilmore G', 'Kai J', 'Kuehn T', 'Thurairajah A', 'Tenorio MC', 'Khan AR', 'Lau JC']\n", + "Journal (Date): Int J Comput Assist Radiol Surg (7/1/2024)\n", + "\n" ] } ], @@ -323,16 +339,16 @@ "id": "e76e9b21", "metadata": { "execution": { - "iopub.execute_input": "2024-06-01T05:12:50.413501Z", - "iopub.status.busy": "2024-06-01T05:12:50.413301Z", - "iopub.status.idle": "2024-06-01T05:12:50.427756Z", - "shell.execute_reply": "2024-06-01T05:12:50.427160Z" + "iopub.execute_input": "2024-09-01T05:14:11.535411Z", + "iopub.status.busy": "2024-09-01T05:14:11.535032Z", + "iopub.status.idle": "2024-09-01T05:14:11.553238Z", + "shell.execute_reply": "2024-09-01T05:14:11.552616Z" }, "papermill": { - "duration": 0.018351, - "end_time": "2024-06-01T05:12:50.429074", + "duration": 0.022036, + "end_time": "2024-09-01T05:14:11.554550", "exception": false, - "start_time": "2024-06-01T05:12:50.410723", + "start_time": "2024-09-01T05:14:11.532514", "status": "completed" }, "tags": [] @@ -374,14 +390,94 @@ " \n", " \n", " \n", + " \n", + " 0\n", + " 39144115\n", + " PMC11207789\n", + " 10.1093/schizbullopen/sgae010\n", + " Cortical Network Disruption Is Minimal in Earl...\n", + " [Van Dyken PC, MacKinley M, Khan AR, Palaniyap...\n", + " 2024\n", + " 1\n", + " 1\n", + " Schizophr Bull Open\n", + " 5\n", + " 1\n", + " sgae010\n", + " \n", + " \n", + " 1\n", + " 38951528\n", + " PMC11217278\n", + " 10.1038/s41531-024-00731-0\n", + " Increased mean diffusivity of the caudal motor...\n", + " [Alushaj E, Hemachandra D, Ganjavi H, Seergobi...\n", + " 2024\n", + " 6\n", + " 29\n", + " NPJ Parkinsons Dis\n", + " 10\n", + " 1\n", + " 128\n", + " \n", + " \n", + " 2\n", + " 38839341\n", + " PMC11154849\n", + " 10.1523/JNEUROSCI.1705-23.2024\n", + " Diffusion MRI of the Hippocampus\n", + " [Karat BG, Kohler S, Khan AR]\n", + " 2024\n", + " 6\n", + " 5\n", + " J Neurosci\n", + " 44\n", + " 23\n", + " \n", + " \n", + " \n", + " 3\n", + " 38822981\n", + " \n", + " 10.1007/s11548-024-03186-z\n", + " MRI-degad: toward accurate conversion of gadol...\n", + " [Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ...\n", + " 2024\n", + " 7\n", + " 1\n", + " Int J Comput Assist Radiol Surg\n", + " 19\n", + " 7\n", + " 1469-1472\n", + " \n", " \n", "\n", "" ], "text/plain": [ - "Empty DataFrame\n", - "Columns: [pmid, pmcid, doi, title, authors, year, month, day, journal, volume, issue, pages]\n", - "Index: []" + " pmid pmcid doi \\\n", + "0 39144115 PMC11207789 10.1093/schizbullopen/sgae010 \n", + "1 38951528 PMC11217278 10.1038/s41531-024-00731-0 \n", + "2 38839341 PMC11154849 10.1523/JNEUROSCI.1705-23.2024 \n", + "3 38822981 10.1007/s11548-024-03186-z \n", + "\n", + " title \\\n", + "0 Cortical Network Disruption Is Minimal in Earl... \n", + "1 Increased mean diffusivity of the caudal motor... \n", + "2 Diffusion MRI of the Hippocampus \n", + "3 MRI-degad: toward accurate conversion of gadol... \n", + "\n", + " authors year month day \\\n", + "0 [Van Dyken PC, MacKinley M, Khan AR, Palaniyap... 2024 1 1 \n", + "1 [Alushaj E, Hemachandra D, Ganjavi H, Seergobi... 2024 6 29 \n", + "2 [Karat BG, Kohler S, Khan AR] 2024 6 5 \n", + "3 [Ogunsanya F, Taha A, Gilmore G, Kai J, Kuehn ... 2024 7 1 \n", + "\n", + " journal volume issue pages \n", + "0 Schizophr Bull Open 5 1 sgae010 \n", + "1 NPJ Parkinsons Dis 10 1 128 \n", + "2 J Neurosci 44 23 \n", + "3 Int J Comput Assist Radiol Surg 19 7 1469-1472 " ] }, "execution_count": 6, @@ -416,14 +512,14 @@ }, "papermill": { "default_parameters": {}, - 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