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About hippunfold used by docker in Linux #343

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rzxxzxy opened this issue Jan 5, 2025 · 1 comment
Open

About hippunfold used by docker in Linux #343

rzxxzxy opened this issue Jan 5, 2025 · 1 comment

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@rzxxzxy
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rzxxzxy commented Jan 5, 2025

@akhanf Dear professor Ali R Khan, I tried to use docker to complete hippunfold, but I still encountered problems. Could you tell me why?
This is my input code: "docker run -it --rm -v /public/HippUnfold/sub-01:/bids -v /public/HippUnfold/sub-01_hippunfold:/output khanlab/hippunfold:latest /bids /output participant --modality T1w --cores 1"

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@jordandekraker
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HippUnfold automatically downloads a trained UNet neural network to run tissue segmentation. The download only needs to happen on the first run. Here, it looks like your docker is not set up to use internet, you could check this out: https://stackoverflow.com/questions/20430371/my-docker-container-has-no-internet

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