documentation.md

Installing pip packages to lower version of python

• Jupyter only supports Python 3.9, install packages using: /path/to/file -m pip3 install biopython, i.e. /usr/bin/python3 -m pip install biopython

Setting up the Ribosomal Database Project

• Setting up RDP & Docker tutorial
• map to local:
  • docker pull rdpstaff/rdp_tools
  • docker run --name rdp_tools -it --platform linux/amd64 -v ~/Desktop/RDPtools_data:/home/RDPuser rdpstaff/rdp_tools
  • sudo password: RDPuser
• launch docker:
  • docker start rdp_tools
  • docker attach rdp_tools

Using RDP to BLAST data

• to unzip all .gz files, run gunzip *.gz
• run ./classifier_script.sh within the Docker environment