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software.html
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<title>Software</title>
<link rel="stylesheet" type="text/css" href="css/style.css">
</head>
<body>
<nav>
<ul>
<li><a href="index.html">Home</a></li>
<li><a href="background.html">Background</a></li>
<li><a href="research.html">Research</a></li>
<li><a href="software.html">Software</a></li>
<li><a href="contact.html">Contact/Links</a></li>
</ul>
</nav>
<header>
<h1>Software</h1>
</header>
<main>
<section>
<h2>HippUnfold</h2>
<img src="img/hippunfold_logo.png" alt="HippUnfold" class="std-image">
<p><a href="https://github.com/khanlab/hippunfold">HippUnfold</a> is a software application for hippocampal segmentation and surface fitting. It leverages prior knowledge about hippocampal shape and ontogeny to provide accurate and reliable measurements of hippocampal volume and shape.</p>
</section>
<section>
<h2>HippoMaps</h2>
<img src="img/HMlogo1.png" alt="HippoMaps" class="std-image">
<p><a href="https://github.com/jordandekraker/hippomaps">HippoMaps</a> is a Python toolbox for analyzing hippocmapal surface data. This includes mapping various types of volumetric image or scattered data onto hippocampal surfaces, custom visualization, surface manipulation, and many other useful tidbits. </p>
</section>
<section>
<h2>HippoNet</h2>
<img src="img/HippoOrg.png" alt="HippoNet" class="std-image">
<p><a href="https://github.com/jordandekraker/hipponet">HippoMaps</a> is a sandbox for building memory-augmented and hippocampus-like neural networks. Currently the only test environment is AtariSpace - a 1D wheel of atari games which can be cylced, watched, or played by a curious network. </p>
</section>
<section>
<h2>sWM</h2>
<img src="img/swm_logo.png" alt="sWM" class="std-image">
<p><a href="https://github.com/jordandekraker/superficial-white-matter">sWM</a> examines superficial white matter of the brain by generating surfaces at multiple depths between the cortex and subcortex. </p>
</section>
<section>
<h2>OldCortex</h2>
<img src="img/paleo-archi-neocortex_flat.png" alt="archicortex" class="std-image">
<p><a href="https://github.com/jordandekraker/OldCortex">OldCortex</a> is a software application designed to visualize the topology of the human cerebral cortex from its initial emegence in mammals to the modern-day human organization. </p>
</section>
<section>
<h2>TemporalPolarMap</h2>
<img src="img/TPconformalMap.gif" alt="temporal pole" class="std-image">
<p><a href="https://github.com/jordandekraker/TemporalPolarMap">TemporalPolarMap</a> is a MATLAB toolbox for flatmapping the human anterior temporal lobe (or temporal pole). </p>
</section>
<section>
<h2>z-brains</h2>
<img src="img/zbrains_banner.png" alt="zbrains" class="std-image">
<p><a href="https://github.com/MICA-MNI/z-brains">z-brains</a> is made in collaboration with the MICA lab to provide intuitive and minimalistic of MRI abnormalities in epilepsy patients for use by clinicians. See also <a href="https://brainscores.ai/">BrainScores</a>. </p>
</section>
<section>
<h2>micapipe</h2>
<img src="img/micapipe_logo_black.jpg" alt="micapipe" class="std-image">
<p><a href="https://github.com/MICA-MNI/micapipe">micapipe</a> is made in collaboration with the MICA lab for preprocessing and extracting features from functional, diffusion-weighted, and structural MRI. </p>
</section>
</main>
<footer>
<p>Copyright © 2023 - Jordan DeKraker</p>
</footer>
</body>
</html>