Option to disable the mod in Mod Config Menu doesn't work

[MoreThanReality]

If mod is disabled in MCM after the game was launched with it enabled, player character spawns on the ship and leaving it causes memory pointer error. If the game is restarted with mod disabled, game either asks you for your background (with Merlord's Character Backgrounds mod installed) while still next to Jiub or teleports you to the office after picking a race (without the aforementioned mod). Either way chargenScenarios is still running and causes game softlock.