Update documentation

Author: jchristopherson

doc/html/annotated.html

@@ -114,12 +114,14 @@
 <tr id="row_0_11_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__fcn.html" target="_self">ode_fcn</a></td><td class="desc">Defines a routine containing a system of first order ODEs </td></tr>
 <tr id="row_0_12_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegral__core_1_1ode__helper.html" target="_self">ode_helper</a></td><td class="desc">Defines a type used to pass information regarding the ODEs to the solver </td></tr>
 <tr id="row_0_13_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegral__core_1_1ode__integrator.html" target="_self">ode_integrator</a></td><td class="desc"></td></tr>
-<tr id="row_0_14_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__integrator__interface.html" target="_self">ode_integrator_interface</a></td><td class="desc">Defines a routine for computing a single integration step in the direction of <code>xout</code> </td></tr>
-<tr id="row_0_15_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__integrator__reset.html" target="_self">ode_integrator_reset</a></td><td class="desc">Resets the state of the integrator </td></tr>
-<tr id="row_0_16_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegral__core_1_1ode__irk.html" target="_self">ode_irk</a></td><td class="desc">Defines an integrator for systems of first order ODEs that is capable of solving the system of equations M * Y' = F(X, Y). This system can be linearly implicit, or explicit. The method utilized is an implicit Runge-Kutta method of order 5. <br  />
+<tr id="row_0_14_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegral__core_1_1ode__integrator2.html" target="_self">ode_integrator2</a></td><td class="desc">This class is an extension of the <a class="el" href="structintegral__core_1_1ode__integrator.html">ode_integrator</a> type, but tailored to support the Fortran libraries that require subroutine support to collect output from the integrator (e.g. RADAU5, DOPRI5, etc.) </td></tr>
+<tr id="row_0_15_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__integrator__interface.html" target="_self">ode_integrator_interface</a></td><td class="desc">Defines a routine for computing a single integration step in the direction of <code>xout</code> </td></tr>
+<tr id="row_0_16_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__integrator__reset.html" target="_self">ode_integrator_reset</a></td><td class="desc">Resets the state of the integrator </td></tr>
+<tr id="row_0_17_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegral__core_1_1ode__irk.html" target="_self">ode_irk</a></td><td class="desc">Defines an integrator for systems of first order ODEs that is capable of solving the system of equations M * Y' = F(X, Y). This system can be linearly implicit, or explicit. The method utilized is an implicit Runge-Kutta method of order 5. <br  />
  </td></tr>
-<tr id="row_0_17_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__jacobian.html" target="_self">ode_jacobian</a></td><td class="desc">Defines a routine capable of computing the Jacobian matrix of a system of N first order ODEs of N variables </td></tr>
-<tr id="row_0_18_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__mass.html" target="_self">ode_mass</a></td><td class="desc">Defines a routine capable of computing the mass matrix of a system of ODE's expressed as M * Y' = F(X, Y) where M is the mass matrix </td></tr>
+<tr id="row_0_18_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__jacobian.html" target="_self">ode_jacobian</a></td><td class="desc">Defines a routine capable of computing the Jacobian matrix of a system of N first order ODEs of N variables </td></tr>
+<tr id="row_0_19_" class="even"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="interfaceintegral__core_1_1ode__mass.html" target="_self">ode_mass</a></td><td class="desc">Defines a routine capable of computing the mass matrix of a system of ODE's expressed as M * Y' = F(X, Y) where M is the mass matrix </td></tr>
+<tr id="row_0_20_"><td class="entry"><span style="width:32px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="structintegral__core_1_1ode__rk45.html" target="_self">ode_rk45</a></td><td class="desc">Defines a Runge-Kutta integrator based upon the 4th/5th order Dormand-Prince formulation. This integrator solves the system of equations Y' = F(X, Y), and is best suited for non-stiff problems </td></tr>
 </table>
 </div><!-- directory -->
 </div><!-- contents -->

doc/html/classes.html

@@ -101,40 +101,44 @@
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