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nucleo_sivmnd2.txt
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nucleo_sivmnd2.txt
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>lcl|NC_004455.1_cds_NP_758886.1_1 [gene=gag] [locus_tag=Siv2gp1] [db_xref=GeneID:956108] [protein=gag protein] [protein_id=NP_758886.1] [location=737..2290] [gbkey=CDS]
ATGGGCGCGAGCGCGTCAGGTCTTAGGGGAGAAAAATTGGACGAGCTGGAAAAGATTAGGTTACGGCCCT
CCGGAAAAAAGAAATACCAGCTGAAACACATAATATGGGTAAGCAAGGAACTAGACAGATTTGGCCTTCA
TGAAAAGCTGTTAGAAAGTAAGGAAGGATGCGAGAAAATTCTTAGCGTACTCTTTCCACTAGTTCCTACA
GGGTCAGAAAATTTAATCTCGCTGTACAACACCTGCTGCTGCGTATGGTGCGTACATGCGAAAGAGAAAG
TAACAGATACAGAGGAAGCGAAAGAGAAAGTAAAACAAAAGCTCCATCTAGTGGCCGAAAAGGAAAATGC
AGCATCAGAAAAAGAACAAAGAGCAATAGTGACACCTAGTGGCCGCTCAAAAAATTACCCAATACAGATA
ATAAATCAGACCCCAGTCCATCAGGGAATTTCACCGCGCACGCTGAATGCGTGGGTAAAATGCATAGAAG
AGAAGAAGTTTAGCCCAGAAATAGTGCCCATGTTCATAGCCTTGTCTGAAGGGTGCCTCCCCTATGATCT
CAATGGCATGCTCAATGCTATTGGAGACCATCAGGGAGCGCTTCAAATAGTGAAGGATGTCATCAATGAG
GAAGCTGCAGACTGGAACTTGAGACACCCACAAGTGGGTCCTATGCCCCAAGGTGTCTTGAGAAACCCAA
CGGGCAGTGATATTGCTGGAACAACAAGCTCCATAGAAGAGCAGATAGAATGGACTACAAGGGAGCAAGA
TGCAGTAAATGTGGGAGGAATATATAAACAATGGATAGTTTTAGGGCTTCAGAAGTGTGTAAGCATGTAT
AATCCAGTAAACATCCTGGACATAAAGCAAGGACCAAAGGAGCCGTTCAAGGACTATGTGGACAGGTTTT
ACAAAGCTCTGCGGGCGGAGCGGACTGATCCACAAGTCAAAACCTGGATGACACAAACTTTGCTCATCCA
GAATGCTAACCCAGATTGTAAATCCATCCTTAAAGGGCTAGGCATGAATCCCTCTTTAGAAGAGATGCCG
CTAGCCTGCCAAGGGGTAGGAGGCCCTAAATATAAAGCACAAATGATGGCAGAGGCTATGAAGGAAGCCC
AGTCAGCTGTAATGATGCAGAATTCGGGAGGGCCACCGCGGGGCCCCCCGAGACAACCTCCTAGAAACAT
CAGATGCCCTAACTGTGGAAAATTTGGTCATGGGCTGAGGGACTGTATAAGCCCTCGAAAAAAGGGATGC
TTCAAGTGTGGAGATCTAGGACACATAATGAGAAATTGCCCAAAGATGGTGAATTTTTTAGGGAATACCC
CCTGGGGCAGTGGCAAACCCAGGAACTTCCCGGCGATGCCATTGACCCCAACGGCCCCTCCAATGCCAGG
GATGGAAGACCCAGCAGAGAGAATGCTGTTAGATTACATGAAGAAAGGGCAACAGCAGAAAGCGGAAAGC
AAACAGGAAAAGAAAGAGAGGGGTCCATACGAGGCAGCTTACAACTCCCTCAGTTCTCTCTTTGGAACAG
ACCAACTACAGTAG
>lcl|NC_004455.1_cds_NP_758887.1_2 [gene=pol] [locus_tag=Siv2gp2] [db_xref=GeneID:956107] [protein=pol protein] [partial=5'] [protein_id=NP_758887.1] [location=<2050..5082] [gbkey=CDS]
TTTTTTAGGGAATACCCCCTGGGGCAGTGGCAAACCCAGGAACTTCCCGGCGATGCCATTGACCCCAACG
GCCCCTCCAATGCCAGGGATGGAAGACCCAGCAGAGAGAATGCTGTTAGATTACATGAAGAAAGGGCAAC
AGCAGAAAGCGGAAAGCAAACAGGAAAAGAAAGAGAGGGGTCCATACGAGGCAGCTTACAACTCCCTCAG
TTCTCTCTTTGGAACAGACCAACTACAGTAGTAGAGATAGAAGGGCAAAAAGTGGAGGCCTTACTGGACA
CAGGAGCTGATGATACAGTAATCAAAGATCTAGATTTAAAAGGTAATTGGAAACCACAGATTATTGGAGG
AATTGGAGGATCAATCAATGTAAAACAGTTTTTCAATTGTAAAGTAACAATAGCAGGCAAAACTACACAC
GCTTCAGTCCTAGTGGGCCCCACACCTGTAAATATTGTAGGTAGAAATGTGCTGAAGAAATTAGGATGTA
CACTAAATTTTCCAGTTAGTAAAGTAGAAACAGTAAAGGTAACACTAAAACCAGGAACTGACGGACCTAA
AATAAAACAATGGCCATTGTCTAAGGAAAAGATTTTAGCCTTACAAGAAATATGTAGTCAAATGGAGAAG
GAAGGCCAGATCTCTAAGATAGGTCCAGAAAATCCTTACAACACACCGGTGTTTTGCATCAAAAAGAAAG
ATGGAACCAGCTGGAGAAAATTGGTAGATTTTAGACAGTTAAACAAAGTAACTCAGGACTTCTTTGAGGT
GCAGTTGGGAATCCCACACCCTGGAGGTCTCAAACAATGTGAGCAAATTACAGTACTGGACATAGGGGAT
GCCTATTTCTCATGTCCTTTGGATGAGGACTTTAGAAAGTACACTGCATTCACCATTCCATCGGTGAATA
ATCAGGGCCCAGGAATCAGGTACCAGTATAATGTCCTACCACAGGGATGGAAGGGCTCCCCAGCCATTTT
CCAGGCAACAGCAGATAAAATCTTACAGCCCTTCAGAGAGAGACATCCAGATGTAGTGATCTATCAATAT
ATGGATGATCTCTTTGTTGGGAGTGATAGAGTTGCCCCAGAACACAGCAGAATGATTCAAGAGTTAAGAG
ACCACCTCTTGTTTTGGGGGCTCGAGACCCCAGACAAGAAGTTTCAAAAGGAACCACCCTTTGAGTGGAT
GGGATACATACTGCACCCTAAGAAATGGACAGTGCAGAAAGTACAGCTTCCAGAGAAAGAAGAATGGACA
GTAAATGACATCCAAAAGTTGGTAGGGAAACTTAATTGGGCAAGTCAGATTTATTCCGGAATTAAAACAA
AAGAGCTCTGTAGACTAATTAGAGGGGCAAAACCCCTAGATGAAAAAGTAGAATGGACTAGAGAAGCAGA
ATTAGAATATGAAGAAAACAAACTCATAGTGCAGGAGGAAGTGCATGGAGTATACTATCAACCAGAGAAG
CCTTTAATGGCAAAGGTTCAAAAATTGACACAAGGGCAATGGAGTTACCAAATAGAGCAGGAGGATAATA
AGCCGCTGAAGGTAGGGAAATATGCCAGAACAAAGAATGCTCATACAAATGAGCTTAGAGTGCTTGCAGG
ACTAGTACAGAAGATTGCAAAAGAAGCTTTAGTGATCTGGGGAAAACTCCCTAAGTTTTATCTGCCAATA
GAAAGAGAAGTCTGGGACCAGTGGTGGCCAGAATATTGGCAAGCCACATGGATTCCCGAATGGGAATTTG
TATCCACTCCACACCTTATCGGGTTGTGGTATAACCTGTTGAGAGAACCTGTGCCAGGAGAAGATGTGTA
TTATGTGGATGGAGCAGCTAACAGAAACTCCAAAGAAGGGAAAGCAGGATATGTAACAGCTAGAAATAAA
TCCAGAGTAATAGCCCTAGAGAATACCACAAACCAAAAAGCAGAATTGGAGGCAATAAAAATGGCATTAC
AAGACTCAGGACCAAAAGTAAATATAGTGACAGATTCACAGTATGCTATGGGTATCCTATCGGCAGCACC
CGACCAATCAGACAACCCCATAGTAAGAGAAATTATAGAACTCATGATCCACAAGGAAGCAGTATACCTA
GCTTGGGTACCAGCACACAAAGGCATAGGAGGGAATGAGCAAGTAGATAAACTAGTGAGCAGAGGAGTAA
GGCAAGTACTGTTTTTAGAAGGCATAGATAAAGCACAAGAAGAGCATGATAAATATCACAATAATTGGAG
GGCATTAGCACAAGACTTCTGTATACCAAACATAGTGGCAAAAGAAATAGTAGCCCAGTGTCCAAAGTGT
CAAACAAAAGGAGAGCCAATACATGGCCAGGTAGATACATCCCCAGGAACCTGGCAAATGGACTGCACAC
ATATGGAAGGAAAAGTAATCATAGCAGCAGTCCATGTAGCAAGTAGGTATCTAGAAGCAGAAGTAATACC
CACAGAAACAGGAAAAGAAACAGCACACTTCCTGTTAAAATTAGCAGGTAGATGGCCAGTAAAACATCTA
CACACAGATAATGGCCCTAATTTCACCAGTGAAAAAGTAGCCACAGTCTGTTGGTGGGCTCAAATAGAGC
ACACTACAGGAATTCCCTACAATCCTCAGAGTCAAGGAGTAATAGAGGCAAAAAACCATCATCTCAAACA
AATCATAGGGCAAGTTAGAGACCAAGCAGAGAAACTAGAAACAGCAGTTCAAATGGCAGTATTAATTCAC
AATTTTAAAAGAAAAGGGGGGATAGGGGAATACAGTCCAGGAGAAAGAATAGTAGACATTATAGCAACAG
ACCTCCTAACAACTAAATTACAACACAATATTCAAAAAATTCAAAATTTTCGGGTTTATTACAGAGAAGG
AAGGGACCAACAGTGGAAAGGACCAGCAGAACTCATTTGGAAAGGAGAAGGAGCGGTGGTAATCAAAGAG
GGGACAGACTTGAAGGTAGTACCAAGGAGAAAAGCAAAAATCATCAGAGATTATGGAAAAACAGTGGATA
GTGATCCCAACGTGGAAGCTTGA
>lcl|NC_004455.1_cds_NP_758888.1_3 [gene=vif] [locus_tag=Siv2gp3] [db_xref=GeneID:956111] [protein=vif protein] [protein_id=NP_758888.1] [location=5042..5680] [gbkey=CDS]
ATGGAAAAACAGTGGATAGTGATCCCAACGTGGAAGCTTGATAGACATGCAGTAGAAAGATGGAATTCAC
TGGTAAAATACCACAAATATAAAGGAGAAAAACATTTGGACAAATGGGATTTAAAGGCACATTTTCAATG
CTCAGGATGGTGGACACACTCACAAAAATATATTCCCCTAGAAGAAGATGAACAGATCATAATCACCATC
CTGTGGAACTTAACCCCAGAAAAAGGATGGTTATCAACTTATGCCATGACAATAGAATATAAGTTCACAA
ACTACTACACTCACATAGACCCCCAAACAGCAGACAGGATGATACATTGGAAATATCTCCCCTGTTTTAC
AGAACAAGCAATAAGACAAGCCCTGCTAGGAAAGAGACTAACAGTGTGCTACTTCCACTGGGGACATAAA
GGGAAGGTAGGGAGCCTGCAGTACTTGGCTTTGCTAAGTTATACAGCCTACTGTAACAATGGCAGAAGGG
GCCCCAGAGATCCCAGAAGGAGCAGGAGAGGTGGATCTAAATACCTGGTTGGAAAGATCTCTGGAGAAAA
TCAATCAGGAGGCAAGATTACACTTCCACCCAGAGTTCCTTTTCCGTCTCTGGAACGCATGCATAGAACA
CTGGCATGA
>lcl|NC_004455.1_cds_NP_758889.1_4 [gene=vpx] [locus_tag=Siv2gp4] [db_xref=GeneID:956114] [protein=vpx protein] [protein_id=NP_758889.1] [location=5520..5819] [gbkey=CDS]
ATGGCAGAAGGGGCCCCAGAGATCCCAGAAGGAGCAGGAGAGGTGGATCTAAATACCTGGTTGGAAAGAT
CTCTGGAGAAAATCAATCAGGAGGCAAGATTACACTTCCACCCAGAGTTCCTTTTCCGTCTCTGGAACGC
ATGCATAGAACACTGGCATGACAGACATCAGAGAAGCTTAAGCTATGCAAAGTATAGATACCTGCTGTTG
ATGAATAAAGCAATGTTTACTCACATGCAACAAGAATGTCCTTGTAGAAGTGGGCATCCGAGAGGACCTC
CTCCTCCAGGGATGGTCTAA
>lcl|NC_004455.1_cds_NP_758890.1_5 [gene=vpr] [locus_tag=Siv2gp5] [db_xref=GeneID:956112] [protein=vpr protein] [protein_id=NP_758890.1] [location=5834..6139] [gbkey=CDS]
ATGGAGCAACCACCCGAGGACGAGGCCCCTCAAAGAGAACCATACAATGAATGGCTAATTGACACCTTAG
CAGAAGTTCAAGAAGAAGCTTTAAAGCATTTTGATAGACGCTTATTGCATGCAGTAGGAAGCTGGATCTA
CAAAACCTATGGGGATACATTAGAAGGGGTGCGACAGCTTATCTCAATTCTTCAAAAAGCTCTGTCTATG
CACTATAGATATGGATGCAGGGAAAGCCGTATCGGACAAGAAGGAGGGGGATGTTACCCCTTACGATCCT
TTCCGAGATCGGACAACCCCCTGTGA
>lcl|NC_004455.1_cds_NP_758891.1_6 [gene=tat] [locus_tag=Siv2gp6] [db_xref=GeneID:956113] [protein=tat protein] [protein_id=NP_758891.1] [location=join(6054..6270,8489..8625)] [gbkey=CDS]
ATGGATGCAGGGAAAGCCGTATCGGACAAGAAGGAGGGGGATGTTACCCCTTACGATCCTTTCCGAGATC
GGACAACCCCCTGTGACACATGTTACTGTAAAAGATGTTGCTATCACTGCCAGCTATGCTTCTTGCAGAA
GGCCTTAGGAGTACATTATCATGCCTACAGAAACAGGAGATCTAGACAGAGACTTCTGGAAAAAATATCA
GAAGATAGCAGGGTTATCGCCCTCTTCCTTATGTCTTCAAGGGAGACTATCTCCGTCCCCACAACCTCAA
ACAGCCAGGCAAAGAAAGAGAAGAAGAGCCCGACTCAGAAAAACAGAGTACCAAATCAGACAGCTCCAAA
GTAG
>lcl|NC_004455.1_cds_NP_758892.1_7 [gene=env] [locus_tag=Siv2gp7] [db_xref=GeneID:956110] [protein=env protein] [protein_id=NP_758892.1] [location=6309..8909] [gbkey=CDS]
ATGCTTAGGTACATAATATTAGGAATAATTGTAGGACTAGGGTTAGGAAACCAATGGGTGACAGTATATT
ATGGCACACCTAAATGGCATAAGGCAGAGACACACCTGTTCTGTGCAACAGAAAATGATTCCTTATGGGT
AACAACTAGTTGTGTTCCCAGCTTGTTGCACTATGAAGAGCAACCAATTCCGAACATAACATGGAATTTC
ACAGGTCCCATGGAAGAAAATGAGGTAGTAATGCAAGCATGGGGAGCTATCTCCTCCATGATAGACGCAG
TATTAAAACCTTGTGTGAAACTGACCCCATACTGTGTCAAGATGCAGTGTACAAAAGGAAAAGACCTTGC
TACCCCTATACCCACTACATCCACCACAACTACCACAACTACCACCAAGACGGTGGCAAATACTACTGAG
TTGGACATAGACACCAATAACACTGAAACTACAACACAACAGAACAGGGTCTGTAAATTCAATACTACAG
GATTATGTAGGGATTGCAAATTGGAGATAGAAGAAAATTTTAGATATGAAGATGTAACTTGTACAAATGG
CACAAATAACACATATTCTTGTTATATGACACAATGCAATACATCAGTAATAACCCAGGACTGTAATAAA
GCATCCACAGATGAAATAAAATTTAGACTGTGTGCACCTCCAGGATATGTTCTCTTGAGGTGCCTAGAAA
GATTGAATGTCTCTAAAAAATGTACCAATATCACAGCAGTACAGTGTACACAGCCATTGCCAGCCACCAC
CTCAACTATGTGTGGATCTAGTGGGACAAAACATGATTATAATGAATTAATACAGACAAATACAAAGAAA
GGCAAAGAGGAGTTTCATGACCATAAGTATGTGTATAGAGTAGATGAGAAGTACAACTTACAAGTAGTAT
GTAGAAGAAAAGGAAACAGATCTGTGATCTCAACACCTAGTGCAACGGGATTGATCTTTTATAGTGGGTT
AGAACCAGGGAAAAATCTTAAGAAAGGTATGTGTCAGTTGAAGGGACAATGGGGAATAGCCATGCATGAT
CTAGCAATAGAATTAAGAAAAATAGACAGCTCCATATGGAGAAATGTAACAAAGGGCTATTGCAAGGGGT
TAAAAAGAAAGGAAAATAGAACGGGTTGTGCCCTTAAAACAATAAAGGTCTCTGACTACACCACGAAAGG
CGAACCAGGAGCAGAAACTATTATGCTCCTCTGTGGAGGAGAATACTTCTTTTGTAATTGGACAAAAATT
TGGAGAACATGGAATGATCAAAATTCATCAGTATGGTATCCATGGATGTCATGTAATATTAGACAAATAA
TAGATGATTGGCATAAAGTAGGAAAGAAGATTTATATGCCTCCTGTATCTGGATTTAATAATGAGATAAG
ATGTTCTAATGATGTAACAGAAATGTTCTTTGAGGTTCAAAAGACAGAAGAGGGATACATCATCAAATTT
GTGCCACAAGATGAGGTACAAAACCGATTTACAGCGGTAGGAGCACACTATCAACTAGTAAAAGTGGACC
CAATTGGCTTTGCTCCTACAGAAGTGGCAAGATATCATCTGCCAGAAGCTAGGCAGAAGAGGGGAGCGGT
CTTGCTTGGGATGTTCGGCCTCCTAGGTTTGGCAGGTTCCACGATGGGCTCAGTGGCGGTGGCCCTGACT
GTCCAGTCTCAGGCTTTGTTGAATGGGATTGTGGAGCAGCAGAAGGTTCTGCTGAGCCTGATAGATCAGC
ACTCCGAGTTATTAAAACTAACTATCTGGGGTGTAAAGAATCTTCAGGCCCGCCTTACAGCCTTGGAGGA
CTATGTAGCTGATCAAGCAAGACTATCCATGTGGGGCTGCTCATTCGCCCAGGTATGCCACACACATGTA
CCATGGCCAAATGACTCTATAACACCAAATTGGACCTCAGAGACATGGCTGGAATGGGATAAAAGAGTAA
CAGCTCTAACTGACAATATGACAGTAAACTTACAGAAGGCATATGAATTGGAGCAAAAGAATATATATGA
GCTAGAAAAATTAGGAGATTGGACTTCCTGGGCTAGCTGGTTCGACTTTACGTGGTGGCTTAAATATGTT
AAGATAGGTTTACTAATAGTAATAGTGATTATAGTGTTAAGGATTTTAGCTTGCTTATGGTCAGTCTTAG
GAAAGTTTAGGCAGGGTTATCGCCCTCTTCCTTATGTCTTCAAGGGAGACTATCTCCGTCCCCACAACCT
CAAACAGCCAGGCAAAGAAAGAGAAGAAGAGCCCGACTCAGAAAAACAGAGTACCAAATCAGACAGCTCC
AAAGTAGAATTTGGGAAGCCTTGGAGCAAAGAGCAAATCAGAGATTGGCTGAAGACTTCAAGGGGCTACG
TGTGGCTGAAGAATCTACAAGCAGTAATTGAATATGGGTGGCAAGAGCTCAAAACAGCAGGAGGAAAAAT
ATTTAAAGTACTACAAGGCTATGCGCAGGGGCTATGGAGCAGAGGGCACCAATGGGGACTATCAACAGCT
GCATGCTTCAGAGCCATTGCTAGGGGCATTATCAACATCCCAAGAAGAATTCGACAGGGAGCAGAAGTCC
TCCTCAACTGA
>lcl|NC_004455.1_cds_NP_758893.1_8 [gene=nef] [locus_tag=Siv2gp8] [db_xref=GeneID:956109] [protein=nef protein] [protein_id=NP_758893.1] [location=8722..9279] [gbkey=CDS]
ATGGGTGGCAAGAGCTCAAAACAGCAGGAGGAAAAATATTTAAAGTACTACAAGGCTATGCGCAGGGGCT
ATGGAGCAGAGGGCACCAATGGGGACTATCAACAGCTGCATGCTTCAGAGCCATTGCTAGGGGCATTATC
AACATCCCAAGAAGAATTCGACAGGGAGCAGAAGTCCTCCTCAACTGACGAAGAGGAAGAAACGGGCTTT
CCAGTATATCCACAGTGCCCAGTAAGAGAACCCACCTACAAGGACTTGGTTGATATGCCCCACTTTTTAA
AAGAAAAGGGGGGACTGGAAGGGATTTGGCATTCTAAAAGAAGAGAAGAGATCTTGGACTTATATGCTCA
AAATGAATGGGGATTCATTCCTACCTGGCAATCTTATACTGATGGCCCAGGGATAAGATACCCGAAGACA
TTTAGGTTCTTATTCAAGCTTTGCCCGGTGGCAGTGCCTCCAGACCAGGAGAACAATGAGTGTAACAAAT
TGCTCCAGTCCTCTCAGCTGGGAATCCAGGAAGAATCCTTGGGGAGAGAGGCTAGTGTGGAAGTTTGA