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[dataset]: Uploading invertebrate stable isotope data to OBIS #248

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ospereir opened this issue Feb 14, 2024 · 3 comments
Open

[dataset]: Uploading invertebrate stable isotope data to OBIS #248

ospereir opened this issue Feb 14, 2024 · 3 comments
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data help questions specific to a dataset Stale workshop Issues created associated with any of the workshops hosted by the SMBD

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@ospereir
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[email protected]

Dataset Title

Stable isotope data of invertebrates off the Southern California Borderland

Describe your dataset and any specific challenges or blockers you have or anticipate.

I am working with stable isotope (d13C, d15N) data of invertebrates associated with phosphorites and ferromanganese crusts off the Southern California Borderland. I need help with uploading the dataset to OBIS.

Info about "raw" Data Files.

The raw data is a file with stable isotope values of invertebrates.

@ospereir ospereir added the data help questions specific to a dataset label Feb 14, 2024
@MathewBiddle MathewBiddle added the workshop Issues created associated with any of the workshops hosted by the SMBD label Apr 22, 2024
@ospereir
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Post-workshop update: I was able to create my occurrence table and eMoF table (pivot_longer() worked great!), check species names using the WoRMS package in R, and did some data cleaning. I'm wrapping up my PhD, but after my defense I'll have more time to dedicate to this and will continue this work then. Thanks for the help!!

@sformel-usgs
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@ospereir feel free to reach out to me when you're ready. We're on the verge of publishing a similar isotope dataset. I'll try to remember to link it here once it's available.

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github-actions bot commented Sep 5, 2024

Thank you for identifying this dataset for mobilization. The workshop hosts wanted to check in. Is there anything you need help with in order to mobilize this dataset to OBIS? If you would like assistance from an OBIS node you can find node contacts listed here.

@github-actions github-actions bot added the Stale label Sep 5, 2024
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