From 4c1e1ca8e40db2e991ab39327bfe1b212331d90c Mon Sep 17 00:00:00 2001 From: 7yl4r <7yl4r@users.noreply.github.com> Date: Mon, 16 Dec 2024 15:14:26 +0000 Subject: [PATCH] deploy: ebaf0c2120900be3eab14b244613dbf71d679062 --- .buildinfo | 2 +- _modules/index.html | 4 +-- _modules/pyobis/checklist/checklist.html | 4 +-- _modules/pyobis/dataset/dataset.html | 4 +-- _modules/pyobis/nodes/nodes.html | 4 +-- _modules/pyobis/occurrences/occurrences.html | 34 ++++++++++++++----- _modules/pyobis/taxa/taxa.html | 4 +-- _static/documentation_options.js | 2 +- changelog_link.html | 4 +-- checklist.html | 4 +-- dataset.html | 4 +-- genindex.html | 4 +-- index.html | 4 +-- nodes.html | 4 +-- objects.inv | Bin 653 -> 653 bytes occurrences.html | 6 ++-- py-modindex.html | 4 +-- search.html | 4 +-- searchindex.js | 2 +- taxa.html | 4 +-- 20 files changed, 60 insertions(+), 42 deletions(-) diff --git a/.buildinfo b/.buildinfo index 9050f66..3605c90 100644 --- a/.buildinfo +++ b/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file records the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 55c4b05eb3d65a4d66700f88c4b57e3f +config: dd9bf10d46465096c9b32fd9d68a4411 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/_modules/index.html b/_modules/index.html index 7c135af..908497b 100644 --- a/_modules/index.html +++ b/_modules/index.html @@ -5,14 +5,14 @@ - Overview: module code — pyobis 1.4.1.dev83+gba2f8fa documentation + Overview: module code — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/_modules/pyobis/checklist/checklist.html b/_modules/pyobis/checklist/checklist.html index 38c310a..566983c 100644 --- a/_modules/pyobis/checklist/checklist.html +++ b/_modules/pyobis/checklist/checklist.html @@ -5,14 +5,14 @@ - pyobis.checklist.checklist — pyobis 1.4.1.dev83+gba2f8fa documentation + pyobis.checklist.checklist — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/_modules/pyobis/dataset/dataset.html b/_modules/pyobis/dataset/dataset.html index 2684b83..fb7dc3f 100644 --- a/_modules/pyobis/dataset/dataset.html +++ b/_modules/pyobis/dataset/dataset.html @@ -5,14 +5,14 @@ - pyobis.dataset.dataset — pyobis 1.4.1.dev83+gba2f8fa documentation + pyobis.dataset.dataset — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/_modules/pyobis/nodes/nodes.html b/_modules/pyobis/nodes/nodes.html index 5a4546a..76025cb 100644 --- a/_modules/pyobis/nodes/nodes.html +++ b/_modules/pyobis/nodes/nodes.html @@ -5,14 +5,14 @@ - pyobis.nodes.nodes — pyobis 1.4.1.dev83+gba2f8fa documentation + pyobis.nodes.nodes — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/_modules/pyobis/occurrences/occurrences.html b/_modules/pyobis/occurrences/occurrences.html index 2fc05d6..c8b43d6 100644 --- a/_modules/pyobis/occurrences/occurrences.html +++ b/_modules/pyobis/occurrences/occurrences.html @@ -5,14 +5,14 @@ - pyobis.occurrences.occurrences — pyobis 1.4.1.dev83+gba2f8fa documentation + pyobis.occurrences.occurrences — pyobis 1.4.1.dev87+gebaf0c2 documentation - + @@ -209,7 +209,7 @@

Source code for pyobis.occurrences.occurrences

) outdf = pd.concat( [ - outdf.infer_objects(), + outdf if len(outdf) else None, pd.DataFrame(res["results"]).infer_objects(), ], ignore_index=True, @@ -236,7 +236,10 @@

Source code for pyobis.occurrences.occurrences

**kwargs, ) outdf = pd.concat( - [outdf.infer_objects(), pd.DataFrame(res["results"]).infer_objects()], + [ + outdf if len(outdf) else None, + pd.DataFrame(res["results"]).infer_objects(), + ], ignore_index=True, ) logger.info(f"Fetched {size} records.") @@ -253,9 +256,16 @@

Source code for pyobis.occurrences.occurrences

on="id", how="inner", ) - self.data = merged - return self.data - self.data = outdf + self.data = {"total": len(merged), "results": merged} + # set the data as [total, results] K-V pair + # but still return the DataFrame since changing this + # will impact existing usage, and be a breaking change + return self.data["results"] + self.data = {"total": len(outdf), "results": outdf} + + # again for not MeasurementOrFacts results, (simple search queries) + # should also return the DataFrame directly for backward compatibility + return self.data["results"] return self.data @@ -263,6 +273,14 @@

Source code for pyobis.occurrences.occurrences

""" Convert the results into a pandas DataFrame """ + # if the data format of the query executed cannot be converted to a + # pandas.DataFrame which is true for other formats like .mvt or kml (not geojson) + # then we should be raising a not implemented rather relying around exceptions + # from pandas while converting + if self.__isKML: + raise NotImplementedError( + "to_pandas method is not yet available for these query types.", + ) return pd.DataFrame(self.data["results"])

@@ -486,7 +504,7 @@

Source code for pyobis.occurrences.occurrences

from pyobis import occurrences occurrences.grid(100, True) // returns in GeoJSON format - ococcurrences.grid(1000, False) // returns in KML format + occurrences.grid(1000, False) // returns in KML format """ url = obis_baseurl + "occurrence/grid/" + str(precision) scientificname = handle_arrstr(scientificname) diff --git a/_modules/pyobis/taxa/taxa.html b/_modules/pyobis/taxa/taxa.html index 54ed10c..4e28e49 100644 --- a/_modules/pyobis/taxa/taxa.html +++ b/_modules/pyobis/taxa/taxa.html @@ -5,14 +5,14 @@ - pyobis.taxa.taxa — pyobis 1.4.1.dev83+gba2f8fa documentation + pyobis.taxa.taxa — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/_static/documentation_options.js b/_static/documentation_options.js index c18fb3d..2cdd059 100644 --- a/_static/documentation_options.js +++ b/_static/documentation_options.js @@ -1,5 +1,5 @@ const DOCUMENTATION_OPTIONS = { - VERSION: '1.4.1.dev83+gba2f8fa', + VERSION: '1.4.1.dev87+gebaf0c2', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/changelog_link.html b/changelog_link.html index 779467d..62fa10a 100644 --- a/changelog_link.html +++ b/changelog_link.html @@ -6,14 +6,14 @@ - Changelog — pyobis 1.4.1.dev83+gba2f8fa documentation + Changelog — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/checklist.html b/checklist.html index f0b86a5..1812805 100644 --- a/checklist.html +++ b/checklist.html @@ -6,14 +6,14 @@ - checklist module — pyobis 1.4.1.dev83+gba2f8fa documentation + checklist module — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/dataset.html b/dataset.html index 18afed3..f532858 100644 --- a/dataset.html +++ b/dataset.html @@ -6,14 +6,14 @@ - dataset module — pyobis 1.4.1.dev83+gba2f8fa documentation + dataset module — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/genindex.html b/genindex.html index b301be1..f2599da 100644 --- a/genindex.html +++ b/genindex.html @@ -5,14 +5,14 @@ - Index — pyobis 1.4.1.dev83+gba2f8fa documentation + Index — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/index.html b/index.html index 4f6ab9f..6e67939 100644 --- a/index.html +++ b/index.html @@ -6,14 +6,14 @@ - pyobis — pyobis 1.4.1.dev83+gba2f8fa documentation + pyobis — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/nodes.html b/nodes.html index ea6523b..17e833d 100644 --- a/nodes.html +++ b/nodes.html @@ -6,14 +6,14 @@ - nodes module — pyobis 1.4.1.dev83+gba2f8fa documentation + nodes module — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/objects.inv b/objects.inv index 643250524d87acc8cc3652a3fbd3ff38a8b7e565..ea7cb94e418210f567f5b7072c2f667493738787 100644 GIT binary patch delta 21 ccmeBW?PZVgLXD diff --git a/occurrences.html b/occurrences.html index 8ad15ae..c472458 100644 --- a/occurrences.html +++ b/occurrences.html @@ -6,14 +6,14 @@ - occurrences module — pyobis 1.4.1.dev83+gba2f8fa documentation + occurrences module — pyobis 1.4.1.dev87+gebaf0c2 documentation - + @@ -263,7 +263,7 @@

Methods:
from pyobis import occurrences
 
 occurrences.grid(100, True) // returns in GeoJSON format
-ococcurrences.grid(1000, False)   // returns in KML format
+occurrences.grid(1000, False)   // returns in KML format
 
diff --git a/py-modindex.html b/py-modindex.html index 55e80bc..c8c8068 100644 --- a/py-modindex.html +++ b/py-modindex.html @@ -5,14 +5,14 @@ - Python Module Index — pyobis 1.4.1.dev83+gba2f8fa documentation + Python Module Index — pyobis 1.4.1.dev87+gebaf0c2 documentation - + diff --git a/search.html b/search.html index d9f32bb..237c947 100644 --- a/search.html +++ b/search.html @@ -5,7 +5,7 @@ - Search — pyobis 1.4.1.dev83+gba2f8fa documentation + Search — pyobis 1.4.1.dev87+gebaf0c2 documentation @@ -13,7 +13,7 @@ - + diff --git a/searchindex.js b/searchindex.js index 6ba1ee9..425969d 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"0.0.1 (2015-12-11)": [[0, "id15"]], "0.0.6.9000 (2016-5-12)": [[0, "id14"]], "0.1.0 (2016-12-12)": [[0, "id13"]], "1.0.0 (2022-7-10)": [[0, "id12"]], "1.0.1 (2022-7-21)": [[0, "id11"]], "1.0.2 (2022-7-22)": [[0, "id10"]], "1.0.3 (2022-7-22)": [[0, "id9"]], "1.1.3 (2022-7-24)": [[0, "id8"]], "1.1.4 (2022-08-30)": [[0, "id7"]], "1.2.4 (2022-08-30)": [[0, "id6"]], "1.2.5 (2022-09-05)": [[0, "id5"]], "1.2.6 (2022-09-05)": [[0, "id4"]], "1.3.0 (2022-11-22)": [[0, "id3"]], "1.3.1 (2023-03-03)": [[0, "id2"]], "1.4.0 (2023-04-11)": [[0, "id1"]], "Changelog": [[0, null]], "Checklist module": [[3, "checklist-module"]], "Contents": [[3, "contents"]], "Dataset module": [[3, "dataset-module"]], "Indices and tables": [[3, "indices-and-tables"]], "Installation": [[3, "installation"]], "Library API": [[3, "library-api"]], "License": [[3, "license"]], "Meta": [[3, "meta"]], "Methods:": [[1, "methods"], [2, "methods"], [4, "methods"], [5, "methods"], [6, "methods"]], "Nodes module": [[3, "nodes-module"]], "Occurrence module": [[3, "occurrence-module"]], "Taxa module": [[3, "taxa-module"]], "Usage": [[1, "usage"], [2, "usage"], [4, "usage"], [5, "usage"], [6, "usage"]], "checklist module": [[1, null]], "dataset module": [[2, null]], "iobis/pyobis dev": [[0, "iobis-pyobis-dev"]], "nodes module": 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