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Auto detection of chromosomal problems #62

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AlistairNWard opened this issue Mar 15, 2017 · 0 comments
Open

Auto detection of chromosomal problems #62

AlistairNWard opened this issue Mar 15, 2017 · 0 comments

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@AlistairNWard
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AlistairNWard commented Mar 15, 2017

We can use EIEE Angelman deletion as a use case (sample 15-0022964). Deletion in chr15. Can we auto detect regions of aberrant copy number and flag the chromosome so the user will look. I have a script that works for this.

Alternatively, maybe we introduce a new visual with simultaneous viz of all chromosomes. Being able to detect large copy number difference could be very useful. This would connect to issue #63.

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