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globals.inc.php.sample
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<?php
/************************
// Settings
************************/
// Main config
$GLOBALS['SERVER'] = "https://www.mydomain.com"; // domain
$GLOBALS['BASEURL'] = "/"; // prefix url path. Set "/" for no prefix
$GLOBALS['AppPrefix'] = "EG"; // project url acronym
$GLOBALS['NAME'] = "Project Name"; // project name
$GLOBALS['SITETITLE'] = "Project Name | Virtual Research Environment"; // site title
$GLOBALS['TIMEOUT'] = 3600; // session and cookies timeout
// Email
$GLOBALS['mail_credentials'] = __DIR__."/mail.conf"; // SMTP credentials
$GLOBALS['FROMNAME'] = "VRE"; // 'From' for VRE tickets and notifications
$GLOBALS['ADMINMAIL'] = "[email protected]"; // BBC address for VRE ticket emails
// SGE
$GLOBALS['queueTask'] = "local.q"; //default queue
// Mongo databases
$GLOBALS['db_credentials'] = __DIR__."/mongo.conf"; // Mongo access
$GLOBALS['dbname_VRE'] = "dbname"; // Database name
//VRE installation paths
$GLOBALS['root'] = dirname(__DIR__); // VRE root directory
$GLOBALS['logFile'] = $GLOBALS['root']."/logs/VRE.log"; // Log file path
$GLOBALS['shared'] = "/data/vre/"; // VRE data directory
$GLOBALS['dataDir'] = $GLOBALS['shared']."userdata/"; // User data directory
$GLOBALS['pubDir'] = $GLOBALS['shared']."public/"; // Public data directory
$GLOBALS['sampleData'] = $GLOBALS['shared']."sampleData/"; // Tool dataset directory
$GLOBALS['sampleData_default'] = "basic"; // Default workspace's dataset entry
// File manager config
$GLOBALS['DISKLIMIT'] = 10*1024*1024*1024; // Default user disk quote (GB)
$GLOBALS['DISKLIMIT_ANON'] = 5*1024*1024*1024; // Default not-registerd disk quote (GB)
$GLOBALS['MAXSIZEUPLOAD'] = 4000; // Maximum upload file size (MB)
$GLOBALS['caduca'] = "182"; // Expiration date for user files (days)
$GLOBALS['project_default'] = "MyFirstProject"; // Default name for user project
$GLOBALS['tmpUser_dir'] = ".tmp/"; // Default name for user temporal forder
// Tool integration models and templates
$GLOBALS['tool_json_schema'] = $GLOBALS['root']."/install/data/tool_schemas/tool_specification/tool_schema.json"; // data model for tool registration
$GLOBALS['tool_io_json_schema'] = $GLOBALS['root']."/install/data/tool_schemas/tool_specification/tool_schema_io.json"; // data model for tool registration - only I/O definition
$GLOBALS['tool_dev_sample'] = $GLOBALS['root']."/install/data/tool_schemas/tool_specification/examples/example.json"; // template for tool registration - step 3
$GLOBALS['tool_io_dev_sample'] = $GLOBALS['root']."/install/data/tool_schemas/tool_specification/examples/example_io.json"; // template for tool registration - step 1 I/O
// Oauth2 authentification
$GLOBALS['auth_credentials'] = __DIR__."/oauth2.conf"; // oauth2 client credentials
$GLOBALS['authAdmin_credentials'] = __DIR__."/oauth2_admin.conf"; // oauth2 client credentials with admin privileges
$GLOBALS['authServer'] = 'https://auth.mydomain.come'; // external oauth2 server
$GLOBALS['authRealm'] = 'realmName'; // keycloak realm
$GLOBALS['urlAuthorize' ] = $GLOBALS['authServer'].'/realms/'.$GLOBALS['authRealm'].'/protocol/openid-connect/auth'; //get autorization_code
$GLOBALS['urlAccessToken'] = $GLOBALS['authServer'].'/realms/'.$GLOBALS['authRealm'].'/protocol/openid-connect/token'; //get token
$GLOBALS['urlResourceOwnerDetails']= $GLOBALS['authServer'].'/realms/'.$GLOBALS['authRealm'].'/protocol/openid-connect/userinfo'; //get user details
$GLOBALS['urlLogout'] = $GLOBALS['authServer'].'/realms/'.$GLOBALS['authRealm'].'/protocol/openid-connect/logout'; //close keyclok session
$GLOBALS['adminToken'] = $GLOBALS['authServer']."/realms/master/protocol/openid-connect/token"; // get Admin token
$GLOBALS['adminRealm'] = $GLOBALS['authServer']."/admin/realms/".$GLOBALS['authRealm']; // admin keycloak users
/************************
// Definitions
************************/
// Default names and local path for VRE
$GLOBALS['URL'] = $GLOBALS['SERVER'].$GLOBALS['BASEURL']; // full VRE URL
$GLOBALS['URL_login'] = $GLOBALS['URL']."/login.php"; // Default for auth server login
$GLOBALS['htmlPath'] = $GLOBALS['root']. "/public/"; // Default path for public folder
$GLOBALS['htmlib'] = $GLOBALS['htmlPath']."htmlib"; // Default path for html templates
$GLOBALS['appsDir'] = $GLOBALS['shared']."apps/soft/"; // Default path for 3rd party soft in validation
$GLOBALS['internalTools'] = $GLOBALS['shared']."apps/internalTools/"; // Default path for internal tool's code
$GLOBALS['tool_submission_file'] = ".submit"; // Default name for runtime job submission file
$GLOBALS['tool_config_file'] = ".config.json"; // Default name for runtime config file
$GLOBALS['tool_log_file'] = ".tool.log"; //Default name for runtime execution log file
$GLOBALS['tool_stageout_file'] = ".results.json"; // Default name for runtime results file
$GLOBALS['tool_metadata_file'] = ".input_metadata.json"; // Default name for runtime metadata file
// Tool and visualizer status
$GLOBALS['tool_status'] = Array(
0 => "Coming soon",
1 => "Active",
2 => "Disabled",
3 => "Testing"
);
// Accepted values for 'compression' attribute
$GLOBALS['compressions'] = Array(
"zip" => "ZIP",
"bz2" => "BZIP2",
"gz" => "GZIP",
"tgz" => "TAR,GZIP",
"tar.gz"=> "TAR,GZIP",
"tbz2" => "TAR,BZIP2",
"tar.bz2" => "TAR,BZIP2",
"tar.Z" => "TAR,ZIP",
"rar" => "RAR",
"tar" => "TAR"
);
// User Roles
$GLOBALS['ROLES'] = array(
"0"=>"Admin",
"1"=>"Tool Dev.",
"2"=>"Common",
"3" =>"Anonymous"
);
$GLOBALS['NO_GUEST'] = array(0,1,2,100,101); // 100, 101?
$GLOBALS['PREMIUM'] = array(0,1);
$GLOBALS['ADMIN'] = array(0);
$GLOBALS['TOOLDEV'] = array(1);
// Styling
$GLOBALS['ROLES_COLOR'] = array("0"=>"blue", "1"=>"grey-cascade", "2"=>"", 100=>"red-haze", 101=>"yellow-haze");
$GLOBALS['STATES_COLOR'] = array("0"=>"font-red", "1"=>"font-green-meadow", "2"=>"font-blue-steel", 3=>"font-green-meadow", 4=>"font-yellow-mint");
$GLOBALS['FILE_MSG_COLOR'] = array("0"=>"note-danger", "1"=>"note-info", "2"=>"note-success", 3=>"note-info");
$GLOBALS['placeholder_input'] = "Click right button to select file"; // text default
$GLOBALS['placeholder_textarea'] = "Click right button to select file(s)"; // text default
/*******************************
// Project specific definitions
********************************/
// Cloud infrastructures
$GLOBALS['cloud'] = "my_on_premises_cloud"; // VRE central cloud. Options are any of $GLOBALS['clouds']
$GLOBALS['clouds'] = Array(
'my_on_premises_cloud' => array(
"http_host" => "www.mydomain.com", // used in getCurrentCloud
"dataDir_fs" => "/NFS/export/path/userdata/", // export path for NFS server
"pubDir_fs" => "/NFS/export/path/public/", // export path for NFS server
"dataDir_virtual" => $GLOBALS['dataDir'],
"pubDir_virtual" => $GLOBALS['pubDir'],
"PMESserver_domain" => "pmes.mydomain.com",
"PMESserver_port" => "80",
"PMESserver_address"=> "/",
"imageTypes" => array(), // list of cloud OCCI templates indexed by RAM (GB)
"auth" => array("required" => False)
),
'my_remote_2' => array(
"http_host" => "www.mydomain2.com", // used in getCurrentCloud
"dataDir_fs" => "/NFS/export/path2/userdata/", // export path for NFS server
"pubDir_fs" => "/NFS/export/path2/public/", // export path for NFS server
"dataDir_virtual" => "/shared/path/for/userdata",
"pubDir_virtual" => "/shared/path/for/public",
"PMESserver_domain" => "pmes.mydomain2.com",
"PMESserver_port" => "8080",
"PMESserver_address"=> "/",
"imageTypes" => array( // list of cloud OCCI templates indexed by RAM (GB)
"2" => array(
"1" => array("id" => "small", "disk" => null, "name" => "small"),
"8" => array("id" => "large-small", "disk" => null, "name" => "large-small"),
"16" => array("id" => "extra_large-small", "disk" => null, "name" => "large-small")
),
"4" => array(
"2" => array("id" => "medium", "disk" => null, "name" => "medium"),
"4" => array("id" => "medium-medium", "disk" => null, "name" => "medium-medium"),
"8" => array("id" => "large-medium", "disk" => null, "name" => "large-medium"),
"16" => array("id" => "extra_large-medium", "disk" => null, "name" => "extra_large-medium")
)
),
"auth" => array(
"required" => True,
"OS_NO_CACHE" => "True",
"OS_CLOUDNAME" => "overcloud",
"OS_AUTH_URL" => "https://extcloud05.ebi.ac.uk:13000/v2.0",
"NOVA_VERSION" => "1.2",
"COMPUTE_API_VERSION" => "1.2",
"OS_USERNAME" => "[email protected]",
"OS_PASSWORD" => "s3cr3t",
"OS_TENANT_NAME" => "tenancy_name"
)
)
);