Remove tainted default channel #33
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "*-[0-9]+.*" | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| build-cross-platform: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.7", "3.10"] | |
| # Breaks due to https://github.com/jpype-project/jpype/issues/1009 | |
| # Should be included once the fix is released | |
| exclude: | |
| - os: windows-latest | |
| python-version: "3.10" | |
| include: | |
| - os: windows-latest | |
| python-version: "3.9" | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{matrix.python-version}} | |
| - name: Setup Java | |
| uses: actions/setup-java@v3 | |
| with: | |
| java-version: '8' | |
| distribution: 'zulu' | |
| - name: Install pyimagej | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e ".[dev]" | |
| - name: Test ImageJ | |
| run: | | |
| python -m pytest -s -p no:faulthandler --color=yes | |
| echo "Done!" | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: psf/black@stable | |
| flake: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| - name: flake src code | |
| run: | | |
| python -m pip install flake8 | |
| python -m flake8 src | |
| - name: flake test code | |
| run: | | |
| python -m flake8 tests | |
| conda-dev-test: | |
| name: Test Conda Development Setup And Code Coverage | |
| runs-on: ubuntu-latest | |
| defaults: | |
| # Steps that rely on the activated environment must be run with this shell setup. | |
| # See https://github.com/marketplace/actions/setup-miniconda#important | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if dev-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('dev-environment.yml') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| # Create env with dev packages | |
| auto-update-conda: true | |
| python-version: 3.9 | |
| miniforge-variant: Mambaforge | |
| environment-file: dev-environment.yml | |
| # Activate imglyb-dev environment | |
| activate-environment: imglyb-dev | |
| auto-activate-base: false | |
| # Use mamba for faster setup | |
| use-mamba: true | |
| - name: Test imglyb | |
| run: | | |
| python -m pytest tests/ -p no:faulthandler --cov-report=xml --cov=. | |
| # We could do this in its own action, but we'd have to setup the environment again. | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v2 |