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imglyb-bdv

imglyb-bdv extends imglyb with convenience methods and structures from BigDataViewer

If you are interested in using imglyb-bdv, have a look at the examples folder and extend the examples as needed!

Installation

Prerequisites

imglyb-bdv has been tested on Linux, macOS, and Windows.

The following tools are required:

  • Python 3
  • Java 8 or 11 JDK (JRE is not enough)
  • Apache Maven

If you use conda, these will be installed for you.

Installing with conda

conda install -c conda-forge imglyb-bdv

Installing with pip

First, install the prerequisites above. Then run:

pip install imglyb-bdv

It is recommended to do this from inside a virtualenv or conda environment, rather than system-wide.

Installing from source

First, install the prerequisites above. Then run:

git clone git://github.com/imglib/imglyb-bdv
cd imglyb-bdv
pip install -e .

It is recommended to do this from inside a virtualenv or conda environment, rather than system-wide.

Usage

It is suggested to follow and extend the examples in the examples folder according to your needs. Note that the examples have additional dependencies (hdf5 and/or dask).

Or, for a higher-level way to use imglyb, check out pyimagej.