From 8d07263b402a456e90cf3439ae94ad2585a91a63 Mon Sep 17 00:00:00 2001 From: Stefan Hahmann Date: Fri, 11 Oct 2024 09:48:33 +0200 Subject: [PATCH 1/2] Update description of CellTracking Challenge Update site Add a mention of the Mastodon plugin in the description of the CellTrackingChallenge Update Site so that it would be found in the list of Update Sites, when looking for 'Mastodon' --- sites.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/sites.yml b/sites.yml index a76a09b..f6ec3e3 100644 --- a/sites.yml +++ b/sites.yml @@ -446,8 +446,11 @@ sites: id: "Ulman" url: "https://sites.imagej.net/Ulman/" description: >- - Implementation of measures and front-end plugins used in and related to + Implementation of measures and front-end FIJI plugins used in and related to the [Cell Tracking Challenge](http://www.celltrackingchallenge.net). + It also provides an extension for importing, editing and exporting + the results of the CellTrackingChallenge, which can be used in + conjunction with the Mastodon plugin. maintainers: - "[Vladimír Ulman](mailto:ulman@mpi-cbg.de)" From 31382072110a2ea989d812c8e6f65767a02004bf Mon Sep 17 00:00:00 2001 From: Curtis Rueden Date: Thu, 21 Nov 2024 15:35:28 -0600 Subject: [PATCH 2/2] Fix capitalization of "Fiji" --- sites.yml | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/sites.yml b/sites.yml index f6ec3e3..edb4f21 100644 --- a/sites.yml +++ b/sites.yml @@ -446,7 +446,7 @@ sites: id: "Ulman" url: "https://sites.imagej.net/Ulman/" description: >- - Implementation of measures and front-end FIJI plugins used in and related to + Implementation of measures and front-end Fiji plugins used in and related to the [Cell Tracking Challenge](http://www.celltrackingchallenge.net). It also provides an extension for importing, editing and exporting the results of the CellTrackingChallenge, which can be used in @@ -1001,7 +1001,7 @@ sites: url: "https://sites.imagej.net/GutAnalysisToolbox/" description: >- [Gut Analysis Toolbox](https://imagej.net/plugins/gut-analysis-toolbox) enables semi-automated analysis of - the neuronal and glial distribution within the gut wall in 2D. It uses a combination of FIJI macros, StarDist + the neuronal and glial distribution within the gut wall in 2D. It uses a combination of Fiji macros, StarDist and deepImageJ for automated segmentation. The primary focus is on characterising the enteric nervous system. The aim is to expand the analysis to other celltypes within the gut and enable 3D analysis. maintainers: @@ -1188,7 +1188,7 @@ sites: description: >- Imaging_FCS 1.491 is a basic ImageJ plugin to calculate and view spatio-temporal correlation functions from 16 bit gray tiff stack files. - It was written under FIJI (ImageJ 1.51f; Java 1.8.0_102) and requires + It was written under Fiji (ImageJ 1.51f; Java 1.8.0_102) and requires Imagescience for statistics (simulator) and Apache Poi for file reading and writing. maintainers: @@ -2295,7 +2295,7 @@ sites: ScientiFig is a tool to build publication-ready scientific figures similar to FigureJ from the IBMP-CNRS site. This version of SF is deprecated. It must be used in combination with the 'Fiji-Legacy' update - site (on old FIJI systems still using java 6). Note also that this + site (on old Fiji systems still using java 6). Note also that this version of SF is not compatible with 'Tissue Analyser'. maintainers: - "[Benoit Aigouy](mailto:scientifig@gmail.com)"