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Merge pull request #155 from ilan-theodoro/main
Add ultrack to the list of update sites
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sites.yml

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@@ -119,15 +119,15 @@ sites:
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Center (AIC) Fiji Course.
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maintainers:
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- "[AIC Janelia](https://imagej.net/orgs/janelia#advanced-imaging-center)"
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- name: "ALPACA"
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id: "ALPACA"
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url: "https://sites.imagej.net/ALPACA/"
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description: >-
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A collection of macros to study cilia.
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maintainers:
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- "[Torsten Schmenger](https://github.com/tschmenger/)"
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- name: "AMPT"
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id: "AMPT"
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url: "https://sites.imagej.net/AMPT/"
@@ -1520,8 +1520,8 @@ sites:
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description: >-
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[Mastodon-DeepLineage](https://github.com/mastodon-sc/mastodon-deep-lineage)
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is an extension for the Mastodon plugin and can only be used in conjunction
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with it. Mastodon allows track cell lineages in 3D+t images.
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Mastodon-DeepLineage extends this with a collection of tools to analyse
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with it. Mastodon allows track cell lineages in 3D+t images.
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Mastodon-DeepLineage extends this with a collection of tools to analyse
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lineages of tracked objects.
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maintainers:
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- "[Stefan Hahmann](https://imagej.net/people/stefanhahmann)"
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url: "https://sites.imagej.net/puncta_process/"
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description: >-
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The [Puncta Process PlugIn](https://imagej.net/plugins/process-puncta/) is a practical analysis tool for counting puncta in 3D image data.
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The process uses single-channel data to produce three specific values: - **Puncta Volume** An average number
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of voxels (volume picture elements) of the object times z,y, and z calibrations. - **Puncta Number** The
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average number of puncta counts within a given ROI (Region of Interest) - **ROI Intensity** The measures the
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The process uses single-channel data to produce three specific values: - **Puncta Volume** An average number
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of voxels (volume picture elements) of the object times z,y, and z calibrations. - **Puncta Number** The
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average number of puncta counts within a given ROI (Region of Interest) - **ROI Intensity** The measures the
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overall pixel intensity over the Region of Interest - The results are summarized in MS Excel format.
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maintainers:
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- "[Dan Higgins](https://github.com/DanHUMassMed)"
@@ -2702,6 +2702,20 @@ sites:
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maintainers:
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- "[Ben Smith](mailto:[email protected])"
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- name: "Ultrack"
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id: "ultrack"
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url: "https://sites.imagej.net/ultrack/"
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description: >-
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[Ultrack](https://imagej.net/plugins/ultrack) is a large-scale cell
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tracking under segmentation uncertainty.
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Capable of managing millions of segmentation instances, it provides
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competitive results with or without deep learning. The method optimizes
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tracking by using a hierarchy of segmentation hypotheses to select
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segments across frames.
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maintainers:
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- "[Ilan Theodoro](mailto:[email protected])"
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- "[Jordao Bragantini](mailto:[email protected])"
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- name: "Vale lab plugins"
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id: "Nico"
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url: "https://sites.imagej.net/Nico/"
@@ -2752,17 +2766,18 @@ sites:
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- "[Michael Blinov](mailto:[email protected])"
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- "[Frank Morgan](mailto:[email protected])"
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- "[Ion Moraru](mailto:[email protected])"
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- name: "Virtual-Orientation-Tools-VOTj"
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id: "VOTj"
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url: "https://sites.imagej.net/Virtual-Orientation-Tool-VOTj/"
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description: >-
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[Virtual-Orientation-Tools-VOTj](https://github.com/sankeert1999/Virtual-Orientation-Tools-VOTj) is a set of Fiji plugins designed to center and align objects of interest
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both horizontally and vertically from their base orientation. The program is available through
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a Fiji plugin.
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[Virtual-Orientation-Tools-VOTj](https://github.com/sankeert1999/Virtual-Orientation-Tools-VOTj)
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is a set of Fiji plugins designed to center and align objects of interest
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both horizontally and vertically from their base orientation. The program
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is available through a Fiji plugin.
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maintainers:
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- "[Sankeert Satheesan](mailto:[email protected])"
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- name: "Visualization Toolset"
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id: "VisualizationToolset"
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url: "https://sites.imagej.net/VisualizationToolset/"

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