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README.md

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Face-to-face connectivity analysis

  1. check that all files in params/ have the values you want
  2. check the preprocessing params in preprocessing/mnefun_params.yaml
  3. run preprocessing/run_coreg.py (run once) to generate copies of the surrogate MRI scaled to each subject's headshape points / cardinal landmarks. Also generates the -trans.fif file
  4. run preprocessing/run_mnefun.py
  5. run preprocessing/morph_labels.py
  6. run analysis/*.py (see analysis/README.md)