.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron
treeplot.png
plain_tree.png
slurm_submissions/calc_percent_tp_source.sub
slurm_submissions/secondary_eighty_density_1to100.sub
slurm_submissions/secondary_eightycorrect_density_1to100.sub
slurm_submissions/secondary_quadruple_density_101to200.sub
slurm_submissions/secondary_quadruple_density_131to260.sub
slurm_submissions/secondary_quadruple_density_1to100.sub
slurm_submissions/secondary_quadruple_density_261to390.sub
slurm_submissions/secondary_quadruple_density_391to520.sub
slurm_submissions/summarise_sim_results/0.3diff_stan.sub
slurm_submissions/summarise_sim_results/0.6diff_stan.sub
slurm_submissions/summarise_sim_results/16active_8year_0.3sim_finalcalc.sub
slurm_submissions/summarise_sim_results/16active_8year_0.6diff_finalcalc.sub
slurm_submissions/summarise_sim_results/16active_8year_1.75onlysim_finalcalc.sub
slurm_submissions/summarise_sim_results/16active_8year_1.75sim_finalcalc.sub
slurm_submissions/summarise_sim_results/16active_8year_3sim_finalcalc.sub
slurm_submissions/summarise_sim_results/16active_8year_diffsim_finalcalc.sub
slurm_submissions/summarise_sim_results/16active_8year_samediff_finalcalc.sub
slurm_submissions/summarise_sim_results/7yrsamp_1.75_acc.sub
slurm_submissions/summarise_sim_results/altsetting_1.75sim_finalcalc.sub
slurm_submissions/summarise_sim_results/double_density_finalcalc.sub
slurm_submissions/summarise_sim_results/double_density_stan.sub
slurm_submissions/summarise_sim_results/dubclusters_1.75diffv1_summary_table.sub
slurm_submissions/summarise_sim_results/dubclusters_finalcalc.sub
slurm_submissions/summarise_sim_results/dubclusters_stan.sub
slurm_submissions/summarise_sim_results/quadruple_density_finalcalc.sub
slurm_submissions/summarise_sim_results/quadruple_density_stan.sub
slurm_submissions/summarise_sim_results/samediff_stan.sub
slurm_submissions/test_template.sub
R/simulation_accuracy_and_performance/simulation_files/test_template.R