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Special character in read group ID causes exception during processing steps #1

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junjun-zhang opened this issue Mar 23, 2019 · 0 comments
Open

Special character in read group ID causes exception during processing steps #1

junjun-zhang opened this issue Mar 23, 2019 · 0 comments

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@junjun-zhang
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Observation: revert bam operation by picard generates lane level bam file, : converts _ in the lane bam name which causes read group ID being different from file name.

Solution: although allowed by SAM specification, we should impose stricter rules to read group ID. Special characters should be avoided.
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@junjun-zhang