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Dengue-Prediction

Requirements

In R console, type below commands.

install.packages("openxlsx")
install.packages("rEDM")

Command

Rscript DenguePrediction.R /path/to/ConfigFile

Result files are produced in ./plot

Configure File

### setting of subject data
subject_data <- "/Users/ryogamisu/iGEM2018/Dengue-Prediction/denguevirus_infected_in_Bankok.xlsx"
subject_sheetname <- "Processed"
subject_rows = 1:28 # A numeric vector specifying which rows in the subject data file to read. If NULL, all rows are read.

### setting of climate data
climate_data <- "/Users/ryogamisu/iGEM2018/Dengue-Prediction/Climate_BANGKOK.xlsx"
climate_sheetname <- "Sheet1"
climate_rows = 1:68

### setting of colnamaes in your subject_data
Time <- "Year"
DEN1_subject <- "DEN1_Total"
DEN2_subject <- "DEN2_Total"
DEN3_subject <- "DEN3_Total"
DEN4_subject <- "DEN4_Total"
DEN_total <- "DEN_Total"

# DEN1_1st_subject <- "DEN1_1"
# DEN1_2nd_subject <- "DEN1_2"
# DEN2_1st_subject <- "DEN2_1"