From 0e8fb98cd8dd9e4d60aee615975477039ae75ba7 Mon Sep 17 00:00:00 2001 From: EstebanGZam Date: Tue, 8 Apr 2025 23:14:26 -0500 Subject: [PATCH 1/4] build: migrate from `setup.py` to `pyproject.toml` with uv support --- .gitignore | 7 +++++- pyproject.toml | 67 ++++++++++++++++++++++++++++++++++++++++++++++++++ setup.py | 56 ----------------------------------------- 3 files changed, 73 insertions(+), 57 deletions(-) create mode 100644 pyproject.toml delete mode 100644 setup.py diff --git a/.gitignore b/.gitignore index a8876288..d1d2a52f 100644 --- a/.gitignore +++ b/.gitignore @@ -172,4 +172,9 @@ cython_debug/ # be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore # and can be added to the global gitignore or merged into this file. For a more nuclear # option (not recommended) you can uncomment the following to ignore the entire idea folder. -#.idea/ \ No newline at end of file +#.idea/ + +# UV related files +.uv/ +uv.lock +venv/ \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 00000000..d9256ba3 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,67 @@ +[build-system] +requires = ["setuptools>=42", "wheel"] +build-backend = "setuptools.build_meta" + +[project] +name = "hololinked" +version = "0.2.10" +authors = [ + {name = "Vignesh Vaidyanathan", email = "vignesh.vaidyanathan@hololinked.dev"}, +] +description = "A ZMQ-based Object Oriented RPC tool-kit for instrument control/data acquisition or controlling generic python objects." +readme = "README.md" +requires-python = ">=3.11" +license = {text = "BSD-3-Clause"} +classifiers = [ + "Programming Language :: Python :: 3", + "License :: OSI Approved :: BSD License", + "Operating System :: OS Independent", + "Intended Audience :: Information Technology", + "Intended Audience :: Science/Research", + "Intended Audience :: Healthcare Industry", + "Intended Audience :: Manufacturing", + "Intended Audience :: Developers", + "Intended Audience :: End Users/Desktop", + "Intended Audience :: Education", + "Topic :: Internet :: WWW/HTTP", + "Topic :: Internet :: WWW/HTTP :: Browsers", + "Topic :: Scientific/Engineering :: Human Machine Interfaces", + "Topic :: System :: Hardware", + "Development Status :: 4 - Beta" +] +keywords = ["data-acquisition", "zmq-rpc", "SCADA/IoT", "Web of Things"] +dependencies = [ + "argon2-cffi>=23.0.0", + "ifaddr>=0.2.0", + "msgspec>=0.18.6", + "pyzmq>=25.1.0", + "SQLAlchemy>=2.0.21", + "SQLAlchemy_Utils>=0.41.1", + "tornado>=6.3.3", + "jsonschema>=4.22.0" +] + +[project.urls] +Documentation = "https://hololinked.readthedocs.io/en/latest/index.html" +Repository = "https://github.com/your-username/hololinked" # Update with actual repository URL + +[tool.setuptools] +packages = ["hololinked", "hololinked.server", "hololinked.rpc", "hololinked.client", "hololinked.param"] + +[project.optional-dependencies] +dev = [ + "ConfigParser==7.1.0", + "fastjsonschema==2.20.0", + "ipython==8.12.3", + "numpy==2.1.2", + "pandas==2.2.3", + "pydantic>=2.8.0,<3.0.0", + "serpent==1.41", + "uvloop==0.20.0" +] + +test = [ + "requests==2.32.3", + "numpy>=2.0.0", + "pydantic>=2.8.0,<3.0.0" +] \ No newline at end of file diff --git a/setup.py b/setup.py deleted file mode 100644 index a9e960d4..00000000 --- a/setup.py +++ /dev/null @@ -1,56 +0,0 @@ -import setuptools - -# read the contents of your README file -from pathlib import Path -long_description = (Path(__file__).parent/"README.md").read_text() - - -setuptools.setup( - name="hololinked", - version="0.2.10", - author="Vignesh Vaidyanathan", - author_email="vignesh.vaidyanathan@hololinked.dev", - description="A ZMQ-based Object Oriented RPC tool-kit for instrument control/data acquisition or controlling generic python objects.", - long_description=long_description, - long_description_content_type="text/markdown", - url="https://hololinked.readthedocs.io/en/latest/index.html", - packages=[ - 'hololinked', - 'hololinked.server', - 'hololinked.rpc', - 'hololinked.client', - 'hololinked.param' - ], - classifiers=[ - "Programming Language :: Python :: 3", - "License :: OSI Approved :: BSD License", - "Operating System :: OS Independent", - "Intended Audience :: Information Technology", - "Intended Audience :: Science/Research", - "Intended Audience :: Healthcare Industry", - "Intended Audience :: Manufacturing", - "Intended Audience :: Developers", - "Intended Audience :: End Users/Desktop", - "Intended Audience :: Education", - "Topic :: Internet :: WWW/HTTP", - "Topic :: Internet :: WWW/HTTP :: Browsers", - "Topic :: Scientific/Engineering :: Human Machine Interfaces", - "Topic :: System :: Hardware", - "Development Status :: 4 - Beta" - ], - python_requires='>=3.11', - install_requires=[ - "argon2-cffi>=23.0.0", - "ifaddr>=0.2.0", - "msgspec>=0.18.6", - "pyzmq>=25.1.0", - "SQLAlchemy>=2.0.21", - "SQLAlchemy_Utils>=0.41.1", - "tornado>=6.3.3", - "jsonschema>=4.22.0" - ], - license="BSD-3-Clause", - license_files=('license.txt', 'licenses/param-LICENSE.txt', 'licenses/pyro-LICENSE.txt'), - keywords=["data-acquisition", "zmq-rpc", "SCADA/IoT", "Web of Things"] -) - \ No newline at end of file From 841555aa1f597ae7a2b79c4459a282b31844091f Mon Sep 17 00:00:00 2001 From: EstebanGZam Date: Fri, 11 Apr 2025 09:06:03 -0500 Subject: [PATCH 2/4] updated readme with instructions on how to use uv in the project --- README.md | 169 +++++++++++++++++++++++++++++++++++------------------- 1 file changed, 111 insertions(+), 58 deletions(-) diff --git a/README.md b/README.md index 803659fa..d67d4c9a 100644 --- a/README.md +++ b/README.md @@ -5,9 +5,9 @@ `hololinked` is a beginner-friendly server side pythonic tool suited for instrumentation control and data acquisition over network, especially with HTTP. If you have a requirement to control and capture data from your hardware/instrumentation, show the data in a browser/dashboard, provide a GUI or run automated scripts, `hololinked` can help. Even for isolated applications or a small lab setup without networking concepts, one can still separate the concerns of the tools that interact with the hardware & the hardware itself. For those that understand, this package is a ZMQ/HTTP-RPC. - + [![Documentation Status](https://readthedocs.org/projects/hololinked/badge/?version=latest)](https://hololinked.readthedocs.io/en/latest/?badge=latest) [![PyPI](https://img.shields.io/pypi/v/hololinked?label=pypi%20package)](https://pypi.org/project/hololinked/) [![Anaconda](https://anaconda.org/conda-forge/hololinked/badges/version.svg)](https://anaconda.org/conda-forge/hololinked) -[![codecov](https://codecov.io/gh/VigneshVSV/hololinked/graph/badge.svg?token=JF1928KTFE)](https://codecov.io/gh/VigneshVSV/hololinked) +[![codecov](https://codecov.io/gh/VigneshVSV/hololinked/graph/badge.svg?token=JF1928KTFE)](https://codecov.io/gh/VigneshVSV/hololinked)
[![email](https://img.shields.io/badge/email%20me-brown)](mailto:vignesh.vaidyanathan@hololinked.dev) [![ways to contact me](https://img.shields.io/badge/ways_to_contact_me-brown)](https://hololinked.dev/contact)
@@ -16,21 +16,22 @@ For those that understand, this package is a ZMQ/HTTP-RPC. ### To Install -From pip - ``pip install hololinked``
-From conda - `conda install -c conda-forge hololinked` +From pip - `pip install hololinked`
+From conda - `conda install -c conda-forge hololinked` -Or, clone the repository (main branch for latest codebase) and install `pip install .` / `pip install -e .`. The conda env ``hololinked.yml`` can also help to setup all dependencies. +Or, clone the repository (main branch for latest codebase) and install `pip install .` / `pip install -e .`. The conda env `hololinked.yml` can also help to setup all dependencies. ### Usage/Quickstart -`hololinked` is compatible with the [Web of Things](https://www.w3.org/WoT/) recommended pattern for developing hardware/instrumentation control software. +`hololinked` is compatible with the [Web of Things](https://www.w3.org/WoT/) recommended pattern for developing hardware/instrumentation control software. Each device or thing can be controlled systematically when their design in software is segregated into properties, actions and events. In object oriented terms: -- the hardware is (generally) represented by a class + +- the hardware is (generally) represented by a class - properties are validated get-set attributes of the class which may be used to model settings, hold captured/computed data or generic network accessible quantities - actions are methods which issue commands like connect/disconnect, execute a control routine, start/stop measurement, or run arbitray python logic - events can asynchronously communicate/push arbitrary data to a client, like alarm messages, streaming measured quantities etc. -In this package, the base class which enables this classification is the `Thing` class. Any class that inherits the `Thing` class +In this package, the base class which enables this classification is the `Thing` class. Any class that inherits the `Thing` class can instantiate properties, actions and events which become visible to a client in this segragated manner. For example, consider an optical spectrometer, the following code is possible: > This is a fairly mid-level intro focussed on HTTP. If you are beginner or looking for ZMQ which can be used with no networking knowledge, check [How-To](https://hololinked.readthedocs.io/en/latest/howto/index.html) @@ -48,71 +49,73 @@ from seabreeze.spectrometers import Spectrometer # device driver subclass from Thing class to "make a network accessible Thing": -```python +```python class OceanOpticsSpectrometer(Thing): """ - OceanOptics spectrometers using seabreeze library. Device is identified by serial number. + OceanOptics spectrometers using seabreeze library. Device is identified by serial number. """ - + ``` #### Instantiating properties -Say, we wish to make device serial number, integration time and the captured intensity as properties. There are certain predefined properties available like `String`, `Number`, `Boolean` etc. +Say, we wish to make device serial number, integration time and the captured intensity as properties. There are certain predefined properties available like `String`, `Number`, `Boolean` etc. or one may define one's own. To create properties: ```python class OceanOpticsSpectrometer(Thing): """class doc""" - - serial_number = String(default=None, allow_None=True, URL_path='/serial-number', + + serial_number = String(default=None, allow_None=True, URL_path='/serial-number', doc="serial number of the spectrometer to connect/or connected", http_method=("GET", "PUT")) # GET and PUT is default for reading and writing the property respectively. # So you can leave it out, especially if you are going to use ZMQ and dont understand HTTP - integration_time = Number(default=1000, bounds=(0.001, None), crop_to_bounds=True, - URL_path='/integration-time', + integration_time = Number(default=1000, bounds=(0.001, None), crop_to_bounds=True, + URL_path='/integration-time', doc="integration time of measurement in milliseconds") - intensity = List(default=None, allow_None=True, - doc="captured intensity", readonly=True, - fget=lambda self: self._intensity) + intensity = List(default=None, allow_None=True, + doc="captured intensity", readonly=True, + fget=lambda self: self._intensity) def __init__(self, instance_name, serial_number, **kwargs): super().__init__(instance_name=instance_name, serial_number=serial_number, **kwargs) ``` + > There is an ongoing work to remove HTTP API from the property API and completely move them to the HTTP server In non-expert terms, properties look like class attributes however their data containers are instantiated at object instance level by default. -For example, the `integration_time` property defined above as `Number`, whenever set/written, will be validated as a float or int, cropped to bounds and assigned as an attribute to each instance of the `OceanOpticsSpectrometer` class with an internally generated name. It is not necessary to know this internally generated name as the property value can be accessed again in any python logic, say, `print(self.integration_time)`. +For example, the `integration_time` property defined above as `Number`, whenever set/written, will be validated as a float or int, cropped to bounds and assigned as an attribute to each instance of the `OceanOpticsSpectrometer` class with an internally generated name. It is not necessary to know this internally generated name as the property value can be accessed again in any python logic, say, `print(self.integration_time)`. To overload the get-set (or read-write) of properties, one may do the following: + ```python class OceanOpticsSpectrometer(Thing): - integration_time = Number(default=1000, bounds=(0.001, None), crop_to_bounds=True, - URL_path='/integration-time', + integration_time = Number(default=1000, bounds=(0.001, None), crop_to_bounds=True, + URL_path='/integration-time', doc="integration time of measurement in milliseconds") @integration_time.setter # by default called on http PUT method def apply_integration_time(self, value : float): self.device.integration_time_micros(int(value*1000)) - self._integration_time = int(value) - + self._integration_time = int(value) + @integration_time.getter # by default called on http GET method def get_integration_time(self) -> float: try: return self._integration_time except AttributeError: - return self.properties["integration_time"].default + return self.properties["integration_time"].default ``` In this case, instead of generating a data container with an internal name, the setter method is called when `integration_time` property is set/written. One might add the hardware device driver logic here (say, supplied by the manufacturer) or a protocol that talks directly to the device to apply the property onto the device. In the above example, there is not a way provided by the device driver library to read the value from the device, so we store it in a variable after applying it and supply the variable back to the getter method. Normally, one would also want the getter to read from the device directly. - + Those familiar with Web of Things (WoT) terminology may note that these properties generate the property affordance. An example for `integration_time` is as follows: ```JSON @@ -135,11 +138,12 @@ Those familiar with Web of Things (WoT) terminology may note that these properti "minimum": 0.001 }, ``` -If you are not familiar with Web of Things or the term "property affordance", consider the above JSON as a description of -what the property represents and how to interact with it from somewhere else. Such a JSON is both human-readable, yet consumable by any application that may use the property - say, a client provider to create a client object to interact with the property or a GUI application to autogenerate a suitable input field for this property. + +If you are not familiar with Web of Things or the term "property affordance", consider the above JSON as a description of +what the property represents and how to interact with it from somewhere else. Such a JSON is both human-readable, yet consumable by any application that may use the property - say, a client provider to create a client object to interact with the property or a GUI application to autogenerate a suitable input field for this property. For example, the Eclipse ThingWeb [node-wot](https://github.com/eclipse-thingweb/node-wot) supports this feature to produce a HTTP(s) client that can issue `readProperty("integration_time")` and `writeProperty("integration_time", 1000)` to read and write this property. -The URL path segment `../spectrometer/..` in href field is taken from the `instance_name` which was specified in the `__init__`. +The URL path segment `../spectrometer/..` in href field is taken from the `instance_name` which was specified in the `__init__`. This is a mandatory key word argument to the parent class `Thing` to generate a unique name/id for the instance. One should use URI compatible strings. #### Specify methods as actions @@ -163,7 +167,7 @@ class OceanOpticsSpectrometer(Thing): def disconnect(self): """disconnect from the spectrometer""" self.device.close() - + ``` Methods that are neither decorated with action decorator nor acting as getters-setters of properties remain as plain python methods and are **not** accessible on the network. @@ -194,6 +198,7 @@ and how to interact with it): } }, ``` + > input and output schema ("input" field above which describes the argument type `serial_number`) are optional and will be discussed in docs #### Defining and pushing events @@ -204,16 +209,16 @@ create a named event using `Event` object that can push any arbitrary data: class OceanOpticsSpectrometer(Thing): # only GET HTTP method possible for events - intensity_measurement_event = Event(name='intensity-measurement-event', + intensity_measurement_event = Event(name='intensity-measurement-event', URL_path='/intensity/measurement-event', - doc="""event generated on measurement of intensity, + doc="""event generated on measurement of intensity, max 30 per second even if measurement is faster.""", - schema=intensity_event_schema) + schema=intensity_event_schema) # schema is optional and will be discussed later, # assume the intensity_event_schema variable is valid - + def capture(self): # not an action, but a plain python method - self._run = True + self._run = True last_time = time.time() while self._run: self._intensity = self.device.intensities( @@ -225,7 +230,7 @@ class OceanOpticsSpectrometer(Thing): int(curtime.microsecond /1000)) if time.time() - last_time > 0.033: # restrict speed to avoid overloading self.intensity_measurement_event.push({ - "timestamp" : measurement_timestamp, + "timestamp" : measurement_timestamp, "value" : self._intensity.tolist() }) last_time = time.time() @@ -234,16 +239,17 @@ class OceanOpticsSpectrometer(Thing): def start_acquisition(self): if self._acquisition_thread is not None and self._acquisition_thread.is_alive(): return - self._acquisition_thread = threading.Thread(target=self.capture) + self._acquisition_thread = threading.Thread(target=self.capture) self._acquisition_thread.start() @action(URL_path='/acquisition/stop', http_method="POST") def stop_acquisition(self): - self._run = False + self._run = False ``` -Events can stream live data without polling or push data to a client whose generation in time is uncontrollable. -In WoT Terminology, such an event becomes specified as an event affordance (or a description of +Events can stream live data without polling or push data to a client whose generation in time is uncontrollable. + +In WoT Terminology, such an event becomes specified as an event affordance (or a description of what the event represents and how to subscribe to it) with subprotocol SSE (HTTP-SSE): ```JSON @@ -275,9 +281,10 @@ what the event represents and how to subscribe to it) with subprotocol SSE (HTTP } } ``` + > data schema ("data" field above which describes the event payload) are optional and discussed later -Events follow a pub-sub model with '1 publisher to N subscribers' per `Event` object, both through ZMQ and HTTP SSE. +Events follow a pub-sub model with '1 publisher to N subscribers' per `Event` object, both through ZMQ and HTTP SSE. To start the Thing, a configurable HTTP Server is already available (from `hololinked.server.HTTPServer`) which redirects HTTP requests to the object: @@ -290,7 +297,7 @@ if __name__ == '__main__': ssl_context = ssl.SSLContext(protocol = ssl.PROTOCOL_TLS) ssl_context.load_cert_chain(f'assets{os.sep}security{os.sep}certificate.pem', keyfile = f'assets{os.sep}security{os.sep}key.pem') - + O = OceanOpticsSpectrometer( instance_name='spectrometer', serial_number='S14155', @@ -299,25 +306,26 @@ if __name__ == '__main__': O.run_with_http_server(ssl_context=ssl_context) # or O.run(zmq_protocols='IPC') - interprocess communication and no HTTP # or O.run(zmq_protocols=['IPC', 'TCP'], tcp_socket_address='tcp://*:9999') - # both interprocess communication & TCP, no HTTP + # both interprocess communication & TCP, no HTTP ``` + > There is an ongoing work to remove HTTP API from the API of all of properties, actions and events and completely move them to the HTTP server for a more accurate syntax. The functionality will not change though. -Here one can see the use of `instance_name` and why it turns up in the URL path. See the detailed example of the above code [here](https://gitlab.com/hololinked-examples/oceanoptics-spectrometer/-/blob/simple/oceanoptics_spectrometer/device.py?ref_type=heads). +Here one can see the use of `instance_name` and why it turns up in the URL path. See the detailed example of the above code [here](https://gitlab.com/hololinked-examples/oceanoptics-spectrometer/-/blob/simple/oceanoptics_spectrometer/device.py?ref_type=heads). -##### NOTE - The package is under active development. Contributors welcome, please check CONTRIBUTING.md and the open issues. Some issues can also be independently dealt without much knowledge of this package. +##### NOTE - The package is under active development. Contributors welcome, please check CONTRIBUTING.md and the open issues. Some issues can also be independently dealt without much knowledge of this package. - [examples repository](https://github.com/hololinked-dev/examples) - detailed examples for both clients and servers -- [helper GUI](https://github.com/hololinked-dev/thing-control-panel) - view & interact with your object's actions, properties and events. +- [helper GUI](https://github.com/hololinked-dev/thing-control-panel) - view & interact with your object's actions, properties and events. - [live demo](https://control-panel.hololinked.dev/#https://examples.hololinked.dev/simulations/oscilloscope/resources/wot-td) - an example of an oscilloscope available for live test - -See a list of currently supported possibilities while using this package [below](#currently-supported). -> You may use a script deployment/automation tool to remote stop and start servers, in an attempt to remotely control your hardware scripts. +See a list of currently supported possibilities while using this package [below](#currently-supported). + +> You may use a script deployment/automation tool to remote stop and start servers, in an attempt to remotely control your hardware scripts. ### A little more about Usage -The HTTP API may be autogenerated or adjusted by the user. If your plan is to develop a truly networked system, it is recommended to learn more and +The HTTP API may be autogenerated or adjusted by the user. If your plan is to develop a truly networked system, it is recommended to learn more and use [Thing Descriptions](https://www.w3.org/TR/wot-thing-description11) to describe your hardware (This is optional and one can still use a classic HTTP client). A Thing Description will be automatically generated if absent as shown in JSON examples above or can be supplied manually. The default end point to fetch thing descriptions are:
`http(s):////resources/wot-td`
If there are errors in generation of Thing Description (mostly due to JSON non-complaint types), one could use:
`http(s):////resources/wot-td?ignore_errors=true` @@ -327,20 +335,65 @@ If there are errors in generation of Thing Description ### Currently Supported - control method execution and property write with a custom finite state machine. -- database (Postgres, MySQL, SQLite - based on SQLAlchemy) support for storing and loading properties when the object dies and restarts. -- auto-generate Thing Description for Web of Things applications. +- database (Postgres, MySQL, SQLite - based on SQLAlchemy) support for storing and loading properties when the object dies and restarts. +- auto-generate Thing Description for Web of Things applications. - use serializer of your choice (except for HTTP) - MessagePack, JSON, pickle etc. & extend serialization to suit your requirement. HTTP Server will support only JSON serializer to maintain comptibility with Javascript (MessagePack may be added later). Default is JSON serializer based on msgspec. -- asyncio compatible - async RPC server event-loop and async HTTP Server - write methods in async +- asyncio compatible - async RPC server event-loop and async HTTP Server - write methods in async - choose from multiple ZeroMQ transport methods which offers some possibilities like the following without changing the code: - expose only a dashboard or web page on the network without exposing the hardware itself - run direct ZMQ-TCP server without HTTP details - serve multiple objects with the same HTTP server, run HTTP Server & python object in separate processes or the same process - -Again, please check examples or the code for explanations. Documentation is being activety improved. + +Again, please check examples or the code for explanations. Documentation is being activety improved. ### Contributing See [organization info](https://github.com/hololinked-dev) for details regarding contributing to this package. There is: -- discord group - [![Discord](https://img.shields.io/discord/1265289049783140464?label=Discord%20Members&logo=discord)](https://discord.com/invite/kEz87zqQXh) -- [weekly meetings](https://github.com/hololinked-dev/#monthly-meetings) and -- [project planning](https://github.com/orgs/hololinked-dev/projects/4) to discuss activities around this repository. \ No newline at end of file + +- discord group - [![Discord](https://img.shields.io/discord/1265289049783140464?label=Discord%20Members&logo=discord)](https://discord.com/invite/kEz87zqQXh) +- [weekly meetings](https://github.com/hololinked-dev/#monthly-meetings) and +- [project planning](https://github.com/orgs/hololinked-dev/projects/4) to discuss activities around this repository. + +#### Development with UV + +This project supports [uv](https://docs.astral.sh/uv/), a fast Python package installer and resolver. Here's how to set up your development environment using uv: + +##### Setup Development Environment + +1. Install uv if you don't have it already: https://docs.astral.sh/uv/getting-started/installation/ + +2. Create and activate a virtual environment: + +```bash +uv venv venv +source venv/bin/activate # On Windows: venv\Scripts\activate +``` + +3. Install the package in development mode with all dependencies: + +```bash +uv pip install -e . +uv pip install -e ".[dev,test]" +``` + +##### Running Tests + +To run the tests with uv: + +```bash +uv pip install coverage +uv run --active coverage run -m unittest discover -s tests -p 'test_*.py' +uv run --active coverage report -m +``` + +##### Using the Lock File + +To ensure reproducible environments, we provide a lock file: + +```bash +# Generate a lock file for your dependencies +uv lock + +# Install from the lock file +uv pip sync +``` From 7b63e33abc81b868cfe7ac42e99dab39febe6606 Mon Sep 17 00:00:00 2001 From: EstebanGZam Date: Mon, 14 Apr 2025 12:59:31 -0500 Subject: [PATCH 3/4] github actions migrated to uv --- .github/workflows/python-publish-pypi.yml | 39 +- .github/workflows/python-publish-testpypi.yml | 38 +- .github/workflows/test-dev.yml | 20 +- .github/workflows/test-release.yml | 25 +- .gitignore | 1 - hololinked/uv.lock | 115 ++ tests/uv.lock | 69 ++ uv.lock | 1050 +++++++++++++++++ 8 files changed, 1296 insertions(+), 61 deletions(-) create mode 100644 hololinked/uv.lock create mode 100644 tests/uv.lock create mode 100644 uv.lock diff --git a/.github/workflows/python-publish-pypi.yml b/.github/workflows/python-publish-pypi.yml index 8f3264cf..ce35e620 100644 --- a/.github/workflows/python-publish-pypi.yml +++ b/.github/workflows/python-publish-pypi.yml @@ -1,4 +1,4 @@ -# This workflow will upload a Python Package using Twine when a release is created +# This workflow will upload a Python Package using uv # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries # This workflow uses actions that are not certified by GitHub. @@ -10,7 +10,7 @@ name: Upload Python Package To Actual PyPI on: workflow_dispatch: - + permissions: contents: read @@ -18,22 +18,21 @@ jobs: deploy: runs-on: ubuntu-latest permissions: - id-token: write # IMPORTANT: mandatory for trusted publishing + id-token: write # IMPORTANT: mandatory for trusted publishing steps: - - uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: 3.11 - - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install build - - name: Build package - run: python -m build - - name: Publish package - uses: pypa/gh-action-pypi-publish@release/v1 - with: - user: __token__ - password: ${{ secrets.PYPI_API_TOKEN }} - + - uses: actions/checkout@v4 + - name: Set up Python + uses: actions/setup-python@v3 + with: + python-version: 3.11 + - name: Install uv + run: curl -LsSf https://astral.sh/uv/install.sh | sh + - name: Add uv to PATH + run: echo "$HOME/.cargo/bin" >> $GITHUB_PATH + - name: Build package + run: uv build + - name: Publish package + uses: pypa/gh-action-pypi-publish@release/v1 + with: + user: __token__ + password: ${{ secrets.PYPI_API_TOKEN }} diff --git a/.github/workflows/python-publish-testpypi.yml b/.github/workflows/python-publish-testpypi.yml index 98a29c45..3f715344 100644 --- a/.github/workflows/python-publish-testpypi.yml +++ b/.github/workflows/python-publish-testpypi.yml @@ -1,4 +1,4 @@ -# This workflow will upload a Python Package using Twine when a release is created +# This workflow will upload a Python Package using uv # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries # This workflow uses actions that are not certified by GitHub. @@ -10,7 +10,7 @@ name: Upload Python Package To Test PyPI on: workflow_dispatch: - + permissions: contents: read @@ -18,22 +18,20 @@ jobs: deploy: runs-on: ubuntu-latest permissions: - id-token: write # IMPORTANT: mandatory for trusted publishing + id-token: write # IMPORTANT: mandatory for trusted publishing steps: - - uses: actions/checkout@v4 - - name: Set up Python - uses: actions/setup-python@v3 - with: - python-version: 3.11 - - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install build - - name: Build package - run: python -m build - - name: Publish package - uses: pypa/gh-action-pypi-publish@release/v1 - with: - user: __token__ - password: ${{ secrets.TEST_PYPI_API_TOKEN }} - repository-url: https://test.pypi.org/legacy/ + - uses: actions/checkout@v4 + - name: Set up Python + uses: actions/setup-python@v3 + with: + python-version: 3.11 + - name: Install uv + run: curl -LsSf https://astral.sh/uv/install.sh | sh + - name: Build package + run: uv build + - name: Publish package + uses: pypa/gh-action-pypi-publish@release/v1 + with: + user: __token__ + password: ${{ secrets.TEST_PYPI_API_TOKEN }} + repository-url: https://test.pypi.org/legacy/ diff --git a/.github/workflows/test-dev.yml b/.github/workflows/test-dev.yml index 024a0c58..df5a1b5b 100644 --- a/.github/workflows/test-dev.yml +++ b/.github/workflows/test-dev.yml @@ -23,7 +23,7 @@ jobs: # python-version: 3.11 - os: ubuntu-latest python-version: 3.12 - + runs-on: ${{ matrix.os }} steps: @@ -35,19 +35,23 @@ jobs: with: python-version: ${{ matrix.python-version }} + - name: Install uv + run: curl -LsSf https://astral.sh/uv/install.sh | sh + - name: Install dependencies - run: pip install -r tests/requirements.txt + run: | + uv venv .venv + source .venv/bin/activate + uv pip sync tests/uv.lock + uv pip install coverage - name: Run unit tests and generate coverage report run: | - pip install coverage - coverage run -m unittest discover -s tests -p 'test_*.py' - coverage report -m + source .venv/bin/activate + uv run coverage run -m unittest discover -s tests -p 'test_*.py' + uv run coverage report -m - name: Upload coverage report to codecov uses: codecov/codecov-action@v4.0.1 with: token: ${{ secrets.CODECOV_TOKEN }} - - - \ No newline at end of file diff --git a/.github/workflows/test-release.yml b/.github/workflows/test-release.yml index 1e3cb4b5..965542f2 100644 --- a/.github/workflows/test-release.yml +++ b/.github/workflows/test-release.yml @@ -6,10 +6,8 @@ on: branches: - release - jobs: test: - strategy: matrix: include: @@ -22,7 +20,7 @@ jobs: # python-version: 3.11 - os: ubuntu-latest python-version: 3.12 - + runs-on: ${{ matrix.os }} steps: @@ -34,15 +32,18 @@ jobs: with: python-version: ${{ matrix.python-version }} + - name: Install uv + run: curl -LsSf https://astral.sh/uv/install.sh | sh + - name: Install dependencies - run: | - pip install -r tests/requirements.txt - pip install jsonschema - pip install -i https://test.pypi.org/simple/ hololinked - + run: | + uv venv .venv + source .venv/bin/activate + uv pip sync tests/uv.lock + uv pip install jsonschema + uv pip install --index-url https://test.pypi.org/simple/ hololinked + - name: Run unit tests to verify if the release to TestPyPI is working run: | - python -m unittest discover -s tests -p 'test_*.py' - - - + source .venv/bin/activate + uv run python -m unittest discover -s tests -p 'test_*.py' diff --git a/.gitignore b/.gitignore index d1d2a52f..c547415f 100644 --- a/.gitignore +++ b/.gitignore @@ -176,5 +176,4 @@ cython_debug/ # UV related files .uv/ -uv.lock venv/ \ No newline at end of file diff --git a/hololinked/uv.lock b/hololinked/uv.lock new file mode 100644 index 00000000..1050606b --- /dev/null +++ b/hololinked/uv.lock @@ -0,0 +1,115 @@ +# This file was autogenerated by uv via the following command: +# uv pip compile pyproject.toml --extra dev --output-file hololinked/uv.lock +annotated-types==0.7.0 + # via pydantic +argon2-cffi==23.1.0 + # via hololinked (pyproject.toml) +argon2-cffi-bindings==21.2.0 + # via argon2-cffi +asttokens==3.0.0 + # via stack-data +attrs==25.3.0 + # via + # jsonschema + # referencing +backcall==0.2.0 + # via ipython +cffi==1.17.1 + # via argon2-cffi-bindings +configparser==7.1.0 + # via hololinked (pyproject.toml) +decorator==5.2.1 + # via ipython +executing==2.2.0 + # via stack-data +fastjsonschema==2.20.0 + # via hololinked (pyproject.toml) +greenlet==3.1.1 + # via sqlalchemy +ifaddr==0.2.0 + # via hololinked (pyproject.toml) +ipython==8.12.3 + # via hololinked (pyproject.toml) +jedi==0.19.2 + # via ipython +jsonschema==4.23.0 + # via hololinked (pyproject.toml) +jsonschema-specifications==2024.10.1 + # via jsonschema +matplotlib-inline==0.1.7 + # via ipython +msgspec==0.19.0 + # via hololinked (pyproject.toml) +numpy==2.1.2 + # via + # hololinked (pyproject.toml) + # pandas +pandas==2.2.3 + # via hololinked (pyproject.toml) +parso==0.8.4 + # via jedi +pexpect==4.9.0 + # via ipython +pickleshare==0.7.5 + # via ipython +prompt-toolkit==3.0.50 + # via ipython +ptyprocess==0.7.0 + # via pexpect +pure-eval==0.2.3 + # via stack-data +pycparser==2.22 + # via cffi +pydantic==2.11.3 + # via hololinked (pyproject.toml) +pydantic-core==2.33.1 + # via pydantic +pygments==2.19.1 + # via ipython +python-dateutil==2.9.0.post0 + # via pandas +pytz==2025.2 + # via pandas +pyzmq==26.4.0 + # via hololinked (pyproject.toml) +referencing==0.36.2 + # via + # jsonschema + # jsonschema-specifications +rpds-py==0.24.0 + # via + # jsonschema + # referencing +serpent==1.41 + # via hololinked (pyproject.toml) +six==1.17.0 + # via python-dateutil +sqlalchemy==2.0.40 + # via + # hololinked (pyproject.toml) + # sqlalchemy-utils +sqlalchemy-utils==0.41.2 + # via hololinked (pyproject.toml) +stack-data==0.6.3 + # via ipython +tornado==6.4.2 + # via hololinked (pyproject.toml) +traitlets==5.14.3 + # via + # ipython + # matplotlib-inline +typing-extensions==4.13.2 + # via + # pydantic + # pydantic-core + # referencing + # sqlalchemy + # typing-inspection +typing-inspection==0.4.0 + # via pydantic +tzdata==2025.2 + # via pandas +uvloop==0.20.0 + # via hololinked (pyproject.toml) +wcwidth==0.2.13 + # via prompt-toolkit diff --git a/tests/uv.lock b/tests/uv.lock new file mode 100644 index 00000000..8fc601cb --- /dev/null +++ b/tests/uv.lock @@ -0,0 +1,69 @@ +# This file was autogenerated by uv via the following command: +# uv pip compile pyproject.toml --extra test --output-file tests/uv.lock +annotated-types==0.7.0 + # via pydantic +argon2-cffi==23.1.0 + # via hololinked (pyproject.toml) +argon2-cffi-bindings==21.2.0 + # via argon2-cffi +attrs==25.3.0 + # via + # jsonschema + # referencing +certifi==2025.1.31 + # via requests +cffi==1.17.1 + # via argon2-cffi-bindings +charset-normalizer==3.4.1 + # via requests +greenlet==3.1.1 + # via sqlalchemy +idna==3.10 + # via requests +ifaddr==0.2.0 + # via hololinked (pyproject.toml) +jsonschema==4.23.0 + # via hololinked (pyproject.toml) +jsonschema-specifications==2024.10.1 + # via jsonschema +msgspec==0.19.0 + # via hololinked (pyproject.toml) +numpy==2.2.4 + # via hololinked (pyproject.toml) +pycparser==2.22 + # via cffi +pydantic==2.11.3 + # via hololinked (pyproject.toml) +pydantic-core==2.33.1 + # via pydantic +pyzmq==26.4.0 + # via hololinked (pyproject.toml) +referencing==0.36.2 + # via + # jsonschema + # jsonschema-specifications +requests==2.32.3 + # 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package installer and resolver. Here's how to set up your development environment using uv: +This project uses [uv](https://docs.astral.sh/uv/), a fast Python package installer and resolver. Here's how to set up your development environment using uv: ##### Setup Development Environment @@ -387,15 +387,3 @@ uv pip install coverage uv run --active coverage run -m unittest discover -s tests -p 'test_*.py' uv run --active coverage report -m ``` - -##### Using the Lock File - -To ensure reproducible environments, we provide a lock file: - -```bash -# Generate a lock file for your dependencies -uv lock - -# Install from the lock file -uv pip sync -``` diff --git a/hololinked/requirements.txt b/hololinked/requirements.txt deleted file mode 100644 index 09b12058..00000000 --- a/hololinked/requirements.txt +++ /dev/null @@ -1,14 +0,0 @@ -ConfigParser==7.1.0 -fastjsonschema==2.20.0 -ifaddr==0.2.0 -ipython==8.12.3 -jsonschema==4.23.0 -msgspec==0.18.6 -numpy==2.1.2 -pandas==2.2.3 -pydantic==2.9.2 -pyzmq==26.2.0 -serpent==1.41 -SQLAlchemy==2.0.30 -tornado==6.4.1 -uvloop==0.20.0 diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index 0694c5aa..00000000 --- a/requirements.txt +++ /dev/null @@ -1,12 +0,0 @@ -argon2-cffi==23.1.0 -ifaddr==0.2.0 -msgspec==0.18.6 -pyzmq>=26.2.0 -SQLAlchemy==2.0.21 -SQLAlchemy_Utils==0.41.1 -tornado==6.3.3 -jsonschema==4.22.0 - - - -