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Need to find what genes the significantly associated SNPs from treeWAS reside in #10

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hollygene opened this issue Apr 14, 2021 · 0 comments
Open

Need to find what genes the significantly associated SNPs from treeWAS reside in #10

hollygene opened this issue Apr 14, 2021 · 0 comments
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E_coli_AMR

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@hollygene
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problem: gblocks removed seqs, which screwed up the positioning and we don't know where the SNPs are
options:
-blast back to reference to find what genes they're in

  • use annotation file?
@hollygene hollygene created this issue from a note in E_coli_AMR (To do) Apr 14, 2021
@hollygene hollygene moved this from To do to Done in E_coli_AMR Jul 25, 2023
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