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Release minimap2-2.29 (r1283)

pull[bot]pushed 2 commits to master • b58b974…1fd85be • 
18 days ago

r1281: with --write-junc, ignore aln with low mapQ

pull[bot]pushed 1 commit to master • df9e650…b58b974 • 
19 days ago

r1280: heuristic to avoid aligning full introns

pull[bot]pushed 1 commit to master • 7a540c3…df9e650 • 
20 days ago

r1278: reduced --min-dp-len to 20 for splice:sr

pull[bot]pushed 1 commit to master • c19e3cc…7a540c3 • 
20 days ago

r1277: don't apply rescored filtering with -P

pull[bot]pushed 1 commit to master • 94d171b…c19e3cc • 
22 days ago

r1276: skip unnecessary reverse spliced alignment

pull[bot]pushed 1 commit to master • ff312a2…94d171b • 
22 days ago

documented 2-pass in README

pull[bot]pushed 3 commits to master • e881104…ff312a2 • 
23 days ago

r1273: reading pass1 junctions works

pull[bot]pushed 1 commit to master • fb81e15…e881104 • 
24 days ago

r1272: support pass-1 junction processing

pull[bot]pushed 2 commits to master • a832a42…fb81e15 • 
24 days ago

r1270: fixed ts tag for PE reads

pull[bot]pushed 2 commits to master • bd03d97…a832a42 • 
26 days ago

r1268: avoid extra small introns

pull[bot]pushed 1 commit to master • 9c3c4b1…bd03d97 • 
29 days ago

r1267: penalize introns without signals

pull[bot]pushed 1 commit to master • 3542a3d…9c3c4b1 • 
on Apr 7

r1266: fine tune mapq for short RNA-seq reads

pull[bot]pushed 3 commits to master • af09464…3542a3d • 
on Apr 7

r1263: ~5-10% performance improvement

pull[bot]pushed 4 commits to master • 54a4718…af09464 • 
on Apr 7

r1259: --jump-bed now functional

pull[bot]pushed 9 commits to master • dd90d9d…54a4718 • 
on Apr 6

caution that the splice:sr is experimental

pull[bot]pushed 1 commit to master • cbe8d61…dd90d9d • 
on Apr 4

r1249: remove redundant junctions in --junc-bed

pull[bot]pushed 1 commit to master • 9d06cef…cbe8d61 • 
on Apr 4

r1248: support --end-bonus in splice mode

pull[bot]pushed 1 commit to master • 924fc4d…9d06cef • 
on Apr 3

minor

pull[bot]pushed 2 commits to master • bbf0bb8…924fc4d • 
on Apr 2

r1245: allow shorter hits for splice:sr

pull[bot]pushed 1 commit to master • 83e9b2e…bbf0bb8 • 
on Apr 2

r1242: append /[12] to read name in --frag mode

pull[bot]pushed 4 commits to master • d4a396c…83e9b2e • 
on Apr 1

r1239: resovled lh3#963

pull[bot]pushed 2 commits to master • f536b69…d4a396c • 
on Apr 1

r1237: documented -x splice:sr

pull[bot]pushed 2 commits to master • ce30004…f536b69 • 
on Mar 31

r1235: allow --splice and --frag at the same time

pull[bot]pushed 4 commits to master • 74ebfb2…ce30004 • 
on Mar 30

fix error (lh3#1223)

pull[bot]pushed 2 commits to master • 618d335…74ebfb2 • 
on Mar 22

more condition on length differences

pull[bot]pushed 2 commits to master • 1eea2fe…618d335 • 
on Nov 19, 2024

a new script to cluster similar sequences

pull[bot]pushed 6 commits to master • fcb5d5e…1eea2fe • 
on Nov 16, 2024

r1221: warn about file reading errors

pull[bot]pushed 1 commit to master • 95807a2…fcb5d5e • 
on Oct 16, 2024

added "junc_pen" to python accordingly

pull[bot]pushed 9 commits to master • 69e3629…95807a2 • 
on Oct 15, 2024

Mention in man page that CIGAR strings in SA tags are approximate (lh…

pull[bot]pushed 1 commit to master • 0cc3cdc…69e3629 • 
on May 24, 2024