cluster.json

{
    "__default__" :
    {
        "queue"     : "normal",
        "nCPUs"     : "1",
        "memory"    : 10000,
        "resources" : "\"select[mem>10000] rusage[mem=10000] span[hosts=1]\"",
        "name"      : "JOBNAME.{rule}.{wildcards}",
        "output"    : "$TEAM/temp.logs/{rule}.{wildcards}.out",
        "error"     : "$TEAM/temp.logs/{rule}.{wildcards}.err",
        "Group"     : "team_hemberg",
        "tCPU"      : "99999"
    },

    "Round1_bwa_mem_to_tags" :
    {
        "nCPUs"    : 5
    },


    "hisat2_Genome_index" :
    {
        "nCPUs"     : 5
    },

    "whippet_quant" :
    {
        "nCPUs"     : 1,
        "memory"    : 2000,
        "resources" : "\"select[mem>2000] rusage[mem=2000] span[hosts=1]\""

    },

    "indexBam" :
    {
        "nCPUs"     : 1,
        "memory"    : 2000,
        "resources" : "\"select[mem>2000] rusage[mem=2000] span[hosts=1]\""

    },


    "Round2_bowtie_to_tags" :
    {
        "nCPUs"    : 5
    },


    "bowtie_to_genome" :
    {
        "nCPUs"    : 2
    },

    "Output" :
    {
        "nCPUs"    : 2,
        "memory"    : 100000,
        "resources" : "\"select[mem>100000] rusage[mem=100000] span[hosts=1]\""
    },

    "total_hisat2_to_Genome" :
    {
        "nCPUs"    : 5
    },


}