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DESCRIPTION
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DESCRIPTION
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Package: glinvci
Type: Package
Title: Phylogenetic Comparative Methods with Uncertainty Estimates
Version: 1.2.4
Date: 2024-04-16
Authors@R: c(person(family="Kiang", given="Woodrow", role=c("cre","aut"), email="[email protected]"))
Maintainer: Woodrow Kiang <[email protected]>
Description: A framework for analytically computing the asymptotic confidence intervals and maximum-likelihood estimates of a class of continuous-time Gaussian branching processes defined by Mitov V, Bartoszek K, Asimomitis G, Stadler T (2019) <doi:10.1016/j.tpb.2019.11.005>. The class of model includes the widely used Ornstein-Uhlenbeck and Brownian motion branching processes. The framework is designed to be flexible enough so that the users can easily specify their own sub-models, or re-parameterizations, and obtain the maximum-likelihood estimates and confidence intervals of their own custom models.
License: GPL-3
RoxygenNote: 7.2.2
VignetteBuilder: utils
Encoding: UTF-8
URL: https://git.sr.ht/~hckiang/glinvci, https://github.com/hckiang/glinvci
Depends: R (>= 3.3.0)
Imports:
optimx,
lbfgsb3c,
BB,
ape,
numDeriv,
plyr,
rlang,
generics,
utils,
stats
Suggests:
testthat