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Renumbering residues from 1 #9

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sbhakat opened this issue Jul 27, 2021 · 0 comments
Open

Renumbering residues from 1 #9

sbhakat opened this issue Jul 27, 2021 · 0 comments

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@sbhakat
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sbhakat commented Jul 27, 2021

I am trying to renumber the residue numbers starting from 1 (first residue should be 1) for the attached protein https://www.dropbox.com/s/z7xj629fhq42ey3/test.pdb?dl=0

If I use
pdb_residue_renumber test.pdb

it doesn't really do the numbering properly. Also when I tried to use the flag -s START_RES using following command
pdb_residue_renumber test.pdb -s 1 -r False -g True I got an error like

ERROR! false could not be retrieved!
ERROR! true could not be retrieved!
Usage: pdb_residue_renumber [options] pdb files and directories with pdb files
pdb_residue_renumber: error: pdb could not be found on rcsb!

Any help or pointing towards some solution in this matter will be highly appreciated.

Best regards,
Bhakat

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