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Gene set enrichment analysis #25

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malonzm1 opened this issue Oct 7, 2022 · 1 comment
Open

Gene set enrichment analysis #25

malonzm1 opened this issue Oct 7, 2022 · 1 comment

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@malonzm1
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malonzm1 commented Oct 7, 2022

Hi!

In performing gene set enrichment analysis on DSS output, how do I generate a background set? I tried setting the p.threshold in callDMR to 1.0 but I'm not sure if this is the right approach.

Thanks and good day.
@malonzm1 malonzm1 changed the title Gene set enrichment Gene set enrichment analysis Oct 7, 2022
@haowulab
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haowulab commented Oct 7, 2022

DSS doesn't provide such functionality. Can't you just use a random set of genes as background?

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@haowulab @malonzm1