CI.yaml

name: CI

on:
  push:
    branches: [master]
  pull_request:
    branches: [master]
  schedule:
    - cron: "0 0 * * *"

jobs:
  lint:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-python@v5
      - name: Upgrade pip and install linters
        run: |
          python -m pip install --upgrade pip
          python -m pip install flake8 pydocstyle packaging
      - name: flake8 PEP compliance checks
        run: python -m flake8 anesthetic tests
      - name: pydocstyle documentation style checks
        run: python -m pydocstyle --convention=numpy anesthetic
      - name: Count missing test fixtures
        run: |
          if [ $( grep -L 'close_figures_on_teardown'
          $(grep -l 'matplotlib' tests/test*.py) | wc -w ) -ne 0]
          then
          missing_tests=$( grep -L 'close_figures_on_teardown'
          $(grep -l 'matplotlib' tests/test*.py) )
          echo "$missing_tests are missing the
          close_figures_on_teardown fixture."
          exit 1
          fi

  sphinx:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v2
      - uses: actions/setup-python@v2
        with:
          python-version: '3.11'
      - name: Upgrade pip and install doc requirements
        run: |
          python -m pip install --upgrade pip
          python -m pip install numpy~=1.0
          python -m pip install -e ".[all,docs]"
      - name: build documentation
        run: |
          cd docs
          make clean
          make html SPHINXOPTS="-W --keep-going -n"

  pip:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest]
        python-version: ['3.9', '3.10', '3.11']
        extras: [true, false]
        include:
          - os: macos-latest
            python-version: '3.11'
            extras: true
          - os: windows-latest
            python-version: '3.11'
            extras: true

    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install hdf5 for macOS
        if: ${{ matrix.os == 'macos-latest' }}
        run: brew install hdf5 c-blosc

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e ".[test]"

      - name: Install extra dependencies
        if: ${{ matrix.extras }}
        run: |
          python -m pip install -e ".[all]"

      - name: Test with pytest
        run: python -m pytest --cov=anesthetic tests

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}


  conda:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest]
        python-version: ['3.9', '3.10', '3.11']
        include:
          - os: macos-latest
            python-version: '3.11'
          - os: windows-latest
            python-version: '3.11'

    steps:
      - uses: actions/checkout@v4
      - name: Set up Python ${{ matrix.python-version }}
        uses: conda-incubator/setup-miniconda@v3
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install hdf5 for macOS
        if: ${{ matrix.os == 'macos-latest' }}
        run: brew install hdf5 c-blosc

      - name: Install dependencies
        shell: bash -l {0}
        run: |
          conda config --append channels conda-forge
          conda install pytest pytest-cov
          conda install scipy numpy 'matplotlib>=3.6.1,<3.9.0' 'pandas~=2.2.0'

      - name: Test with pytest
        shell: bash -l {0}
        run: python -m pytest --cov=anesthetic tests

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}

  test-build-n-publish:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python 3.11
        uses: actions/setup-python@v5
        with:
          python-version: 3.11
      - name: Install pypa/build
        run: python -m pip install build --user
      - name: Build a binary wheel and a source tarball
        run: python -m build --sdist --wheel --outdir dist/
      - name: Publish to Test PyPI
        uses: pypa/gh-action-pypi-publish@release/v1
        continue-on-error: true
        with:
          password: ${{ secrets.TEST_PYPI_API_TOKEN }}
          repository_url: https://test.pypi.org/legacy/
          skip_existing: true

  minimum-dependencies:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Set up Python 3.9
        uses: actions/setup-python@v5
        with:
          python-version: 3.9

      - name: Upgrade pip and install tomli
        run: |
          python -m pip install --upgrade pip
          python -m pip install tomli
      - name: Install minimum dependencies
        run: eval "python -m pip install $(./bin/min_dependencies.py)"
      - name: Install anesthetic
        run: python -m pip install -e ".[test]"

      - name: Test with pytest
        run: python -m pytest --cov=anesthetic tests

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.CODECOV_TOKEN }}

  latest-dependencies:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Set up latest stable Python 3
        uses: actions/setup-python@v5
        with:
          python-version: 3.x

      - name: Upgrade pip and install tomli
        run: |
          python -m pip install --upgrade pip
          python -m pip install tomli
      - name: Install latest dependencies
        run: eval "python -m pip install $(./bin/latest_dependencies.py)"
      - name: Install pytest and anesthetic
        run: |
          python -m pip install pytest
          python -m pip install --no-deps -e .

      - name: Test with pytest
        run: python -m pytest tests

  check-for-new-versions:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
      - name: Set up latest stable Python 3
        uses: actions/setup-python@v5
        with:
          python-version: 3.x

      - name: Upgrade pip and install tomli and requests
        run: |
          python -m pip install --upgrade pip
          python -m pip install tomli requests

      - name: Install anesthetic
        run: python -m pip install -e ".[test]"

      - name: Check anesthetic dependencies are up to date
        run: python -m pytest ./bin/check_up_to_date.py