##Purpose: SAGex is a lightweight genome extrapolation tool. It will take any genomic nucleotide sequence (in FASTA format) and a second nucleotide sequence, and recruit all contigs that are in the first genome's tetranucleotide space. This was originally intended for Single-cell Amplified Genomes (SAGs) and Metegenomes for recruitment.
##Installation:
git clone [email protected]:hallamlab/sagex.git
or to download the zipped file:
wget https://github.com/hallamlab/sagex/archive/master.zip
unzip sagex-master.zip
Regardless of your download method, to compile sagex type:
cd sagex
make sagex
This will compile the source files and create the executable sagex.
Add this directory to your path to complete installation.
To make sure everything has compiled properly on your machine try:
make test
There should be no errors with this test.
Refer to the Issues page for known errors during installation and run-time. If you have encountered a new error please make an issue with the appropriate label.
##Citation: This is an academic software so when you use sagex please cite using the following: Durno, W.E., Hawley, A.K., Morgan-Lang, C., and Hallam, S.J. SAGex. Bioinformatics. 201X.