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How to understand the output genotyped from svtyper? #108

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xujinshengjsxu opened this issue Oct 13, 2019 · 0 comments
Open

How to understand the output genotyped from svtyper? #108

xujinshengjsxu opened this issue Oct 13, 2019 · 0 comments

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@xujinshengjsxu
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    I'm curious about the output from merge multiple samples using svtyper and lmerge. It seems like different from SNP vcf from GATK. How can I understand the REF (N), ALT (<DEL>) and genotype such as 0/0, 0/1. The situations are as follows.
    Thanks a lot.

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