Search results

Hail import_table does not properly support the Byte Order Mark from UTF-8

bug

query

Status: Open.

#6342 In hail-is/hail;

· danking opened on Jun 13, 2019

4 comments

String split behavior inconsistent with Python

bug

query

Status: Open.

#9383 In hail-is/hail;

· nawatts opened on Aug 31, 2020

5 comments

hail.linalg.BlockMatrix/persist does not work

query

Status: Open.

#14689 In hail-is/hail;

· ehigham opened on Sep 17, 2024

1 comment



import_plink cannot read files with out-of-order variants

bug

query

Status: Open.

#9656 In hail-is/hail;

· tpoterba opened on Oct 29, 2020

hailctl dataproc does not use specified gcloud configuration

bug

help wanted

query

Status: Open.

#9587 In hail-is/hail;

· nawatts opened on Oct 8, 2020

[query] the VDS combiner should have a way to filter GVCFs on import

new-feature

query

Status: Open.

#13223 In hail-is/hail;

· danking opened on Jun 30, 2023

How to capture summarize() outputs?

new-feature

query

Status: Open.

#12943 In hail-is/hail;

· danking opened on Apr 27, 2023

Hail does not properly support Haploid genotype calls

bug

query

Status: Open.

#13149 In hail-is/hail;

· danking opened on Jun 7, 2023

1 comment

Batch cannot make directories in /io if the user is not root

batch

bug

Status: Open.

#13154 In hail-is/hail;

· jigold opened on Jun 8, 2023

2 comments

Hail copy tool blows memory when copying a large file in Hail Batch

bug

fs

Status: Open.

#12922 In hail-is/hail;

· danking opened on Apr 24, 2023

Implement support for VQSR in QoB

batch

new-feature

Status: Open.

#12905 In hail-is/hail;

· danking opened on Apr 19, 2023

1 comment

ResourceGroup issues modelling writing a bgzipped file and its TBI index via write_output

batch

new-feature

Status: Open.

#13191 In hail-is/hail;

· jmarshall opened on Jun 17, 2023

2

10 comments

[query] Hail should support more recent version of VEP

new-feature

query

Status: Open.

#13167 In hail-is/hail;

· danking opened on Jun 9, 2023

[batch] it is not simple and straightforward to write a Python script that uses Python jobs which need: Hail, a set of local Python files, and third party dependencies.

batch

new-feature

Status: Open.

#13161 In hail-is/hail;

· danking opened on Jun 9, 2023

[batch] If batch/regions is not explicitly specified, Batch should (maybe) fail.

batch

new-feature

Status: Open.

#13234 In hail-is/hail;

· danking opened on Jul 11, 2023

[qob] log4j errors are showing up in JVM container logs

bug

query

Status: Open.

#13242 In hail-is/hail;

· jigold opened on Jul 13, 2023

2 comments

[batch] In Azure, we expect a quarter-core 50MiB job to land on an F*s machine but it lands on a D*ds machine.

batch

bug

Status: Open.

#12958 In hail-is/hail;

· danking opened on May 1, 2023

1 comment

QoB's job URL should use ?last_job_id to send us to the page containing the current driver.

batch

new-feature

Status: Open.

#13062 In hail-is/hail;

· danking opened on May 16, 2023

[batch] Batch should have a way to proactively prevent users from scheduling jobs in regions different from their data

batch

new-feature

Status: Open.

#13232 In hail-is/hail;

· danking opened on Jul 10, 2023

[query] a few VEP fields might be specified incorrectly in the VEP JSON schema

batch

bug

query

Status: Open.

#13267 In hail-is/hail;

· danking opened on Jul 20, 2023

[auth] deleting a user is broken in the UI

batch

bug

Status: Open.

#13256 In hail-is/hail;

· jigold opened on Jul 18, 2023

3 comments

The Hail copy tool is far from saturating the network in Hail Batch

bug

fs

Status: Open.

#12923 In hail-is/hail;

· danking opened on Apr 24, 2023

3 comments

[batch] Hail Batch in Azure-Terra

batch

new-feature

Status: Open.

#13941 In hail-is/hail;

· danking opened on Oct 30, 2023

[batch] fill out production readiness checklist for Hail Batch in Azure-Terra

batch

Status: Open.

#13953 In hail-is/hail;

· danking opened on Oct 30, 2023

[batch] reproduce Ben's non-responsive worker issue and convert to a test

batch

bug

Status: Open.

#13992 In hail-is/hail;

· danking opened on Nov 8, 2023