raxml.mt.Eliurus_cytb_aligned_haps.fas

run Raxml

This is RAxML MPI Process Number: 0

RAxML can't, parse the alignment file as phylip file 
it will now try to parse it as FASTA file



Using BFGS method to optimize GTR rate parameters, to disable this specify "--no-bfgs" 



This is RAxML version 8.2.11 released by Alexandros Stamatakis on June 2017.

With greatly appreciated code contributions by:
Andre Aberer      (HITS)
Simon Berger      (HITS)
Alexey Kozlov     (HITS)
Kassian Kobert    (HITS)
David Dao         (KIT and HITS)
Sarah Lutteropp   (KIT and HITS)
Nick Pattengale   (Sandia)
Wayne Pfeiffer    (SDSC)
Akifumi S. Tanabe (NRIFS)
Charlie Taylor    (UF)


Alignment has 664 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 4.35%

RAxML rapid bootstrapping and subsequent ML search

Using 1 distinct models/data partitions with joint branch length optimization



Executing 1000 rapid bootstrap inferences and thereafter a thorough ML search 

All free model parameters will be estimated by RAxML
ML estimate of 25 per site rate categories

Likelihood of final tree will be evaluated and optimized under GAMMA

GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Alignment Patterns: 664
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR




RAxML was called as follows:

raxmlHPC-MPI -f a -m GTRCAT -o EU349782.1 -p 23836 -x 29008 -# autoMRE -s Eliurus_cytb_aligned_haps.fas -n Eliurus_spp_cytb_mtDNA_sequenced 



Time for BS model parameter optimization on Process 0: 6.648708 seconds
Bootstrap[0]: Time 13.142353 seconds, bootstrap likelihood -10922.582103, best rearrangement setting 7
Bootstrap[1]: Time 5.989096 seconds, bootstrap likelihood -11471.408668, best rearrangement setting 6
Bootstrap[2]: Time 6.559883 seconds, bootstrap likelihood -11755.839507, best rearrangement setting 5
Bootstrap[3]: Time 7.126734 seconds, bootstrap likelihood -11860.500066, best rearrangement setting 13
Bootstrap[4]: Time 6.562214 seconds, bootstrap likelihood -11691.996528, best rearrangement setting 14
Bootstrap[5]: Time 7.148749 seconds, bootstrap likelihood -11135.465053, best rearrangement setting 11
Bootstrap[6]: Time 5.731806 seconds, bootstrap likelihood -11948.907507, best rearrangement setting 10
Bootstrap[7]: Time 5.741967 seconds, bootstrap likelihood -11361.712005, best rearrangement setting 13
Bootstrap[8]: Time 7.188595 seconds, bootstrap likelihood -12012.926534, best rearrangement setting 13
Bootstrap[9]: Time 6.337687 seconds, bootstrap likelihood -11331.875653, best rearrangement setting 10
Bootstrap[10]: Time 6.078915 seconds, bootstrap likelihood -10406.549150, best rearrangement setting 12
Bootstrap[11]: Time 5.496073 seconds, bootstrap likelihood -11362.873741, best rearrangement setting 5
Bootstrap[12]: Time 6.125060 seconds, bootstrap likelihood -11663.921004, best rearrangement setting 13
Bootstrap[13]: Time 6.416047 seconds, bootstrap likelihood -11972.915493, best rearrangement setting 8
Bootstrap[14]: Time 5.795048 seconds, bootstrap likelihood -11678.046523, best rearrangement setting 8
Bootstrap[15]: Time 6.362630 seconds, bootstrap likelihood -11825.742913, best rearrangement setting 10
Bootstrap[16]: Time 6.101265 seconds, bootstrap likelihood -11756.674725, best rearrangement setting 12
Bootstrap[17]: Time 6.596483 seconds, bootstrap likelihood -11274.119372, best rearrangement setting 15
Bootstrap[18]: Time 5.740183 seconds, bootstrap likelihood -11904.617321, best rearrangement setting 8
Bootstrap[19]: Time 7.034638 seconds, bootstrap likelihood -11731.819054, best rearrangement setting 13
Bootstrap[20]: Time 5.942417 seconds, bootstrap likelihood -12319.774265, best rearrangement setting 5
Bootstrap[21]: Time 6.706213 seconds, bootstrap likelihood -11987.680538, best rearrangement setting 10
Bootstrap[22]: Time 5.408897 seconds, bootstrap likelihood -11243.005700, best rearrangement setting 6
Bootstrap[23]: Time 5.468582 seconds, bootstrap likelihood -11706.687511, best rearrangement setting 6
Bootstrap[24]: Time 6.487008 seconds, bootstrap likelihood -12129.199866, best rearrangement setting 10
Bootstrap[25]: Time 5.899392 seconds, bootstrap likelihood -11914.717807, best rearrangement setting 5
Bootstrap[26]: Time 7.096026 seconds, bootstrap likelihood -11559.454987, best rearrangement setting 8
Bootstrap[27]: Time 5.478180 seconds, bootstrap likelihood -11854.096630, best rearrangement setting 8
Bootstrap[28]: Time 5.837321 seconds, bootstrap likelihood -12152.958214, best rearrangement setting 7
Bootstrap[29]: Time 5.812712 seconds, bootstrap likelihood -11423.868639, best rearrangement setting 15
Bootstrap[30]: Time 5.860598 seconds, bootstrap likelihood -11466.490308, best rearrangement setting 7
Bootstrap[31]: Time 6.421266 seconds, bootstrap likelihood -12037.824801, best rearrangement setting 13
Bootstrap[32]: Time 6.502607 seconds, bootstrap likelihood -11415.814040, best rearrangement setting 13
Bootstrap[33]: Time 6.274350 seconds, bootstrap likelihood -11497.985809, best rearrangement setting 7
Bootstrap[34]: Time 5.925451 seconds, bootstrap likelihood -11661.099710, best rearrangement setting 5
Bootstrap[35]: Time 5.685534 seconds, bootstrap likelihood -12031.186043, best rearrangement setting 6
Bootstrap[36]: Time 6.873316 seconds, bootstrap likelihood -11917.020123, best rearrangement setting 10
Bootstrap[37]: Time 6.611810 seconds, bootstrap likelihood -12153.668089, best rearrangement setting 11
Bootstrap[38]: Time 6.141650 seconds, bootstrap likelihood -12192.321707, best rearrangement setting 6
Bootstrap[39]: Time 5.185494 seconds, bootstrap likelihood -11491.381013, best rearrangement setting 6
Bootstrap[40]: Time 6.529716 seconds, bootstrap likelihood -11715.488188, best rearrangement setting 9
Bootstrap[41]: Time 6.301204 seconds, bootstrap likelihood -11341.689715, best rearrangement setting 8
Bootstrap[42]: Time 6.870837 seconds, bootstrap likelihood -11280.534299, best rearrangement setting 9
Bootstrap[43]: Time 7.111196 seconds, bootstrap likelihood -12560.275702, best rearrangement setting 15
Bootstrap[44]: Time 5.533854 seconds, bootstrap likelihood -11708.452088, best rearrangement setting 14
Bootstrap[45]: Time 6.379070 seconds, bootstrap likelihood -12494.332558, best rearrangement setting 6
Bootstrap[46]: Time 5.741813 seconds, bootstrap likelihood -12489.253554, best rearrangement setting 14
Bootstrap[47]: Time 6.079570 seconds, bootstrap likelihood -12169.477545, best rearrangement setting 9
Bootstrap[48]: Time 5.844560 seconds, bootstrap likelihood -10481.897281, best rearrangement setting 10
Bootstrap[49]: Time 6.138843 seconds, bootstrap likelihood -11009.617130, best rearrangement setting 9
Bootstrap[50]: Time 6.184454 seconds, bootstrap likelihood -11804.612951, best rearrangement setting 14
Bootstrap[51]: Time 7.240122 seconds, bootstrap likelihood -12227.107528, best rearrangement setting 14
Bootstrap[52]: Time 5.994387 seconds, bootstrap likelihood -11773.601676, best rearrangement setting 6
Bootstrap[53]: Time 5.476669 seconds, bootstrap likelihood -11686.472570, best rearrangement setting 13
Bootstrap[54]: Time 5.266681 seconds, bootstrap likelihood -11413.838851, best rearrangement setting 14
Bootstrap[55]: Time 5.883535 seconds, bootstrap likelihood -11887.460281, best rearrangement setting 10
Bootstrap[56]: Time 7.082462 seconds, bootstrap likelihood -11295.938405, best rearrangement setting 12
Bootstrap[57]: Time 5.512098 seconds, bootstrap likelihood -11365.575761, best rearrangement setting 5
Bootstrap[58]: Time 5.709814 seconds, bootstrap likelihood -12145.304507, best rearrangement setting 6
Bootstrap[59]: Time 6.103395 seconds, bootstrap likelihood -11313.561366, best rearrangement setting 10
Bootstrap[60]: Time 6.215171 seconds, bootstrap likelihood -11740.003143, best rearrangement setting 7
Bootstrap[61]: Time 6.027059 seconds, bootstrap likelihood -11743.793837, best rearrangement setting 11
Bootstrap[62]: Time 6.451511 seconds, bootstrap likelihood -12297.064227, best rearrangement setting 8
Bootstrap[63]: Time 4.996720 seconds, bootstrap likelihood -11848.032031, best rearrangement setting 6
Bootstrap[64]: Time 4.978816 seconds, bootstrap likelihood -11506.292583, best rearrangement setting 5
Bootstrap[65]: Time 5.767895 seconds, bootstrap likelihood -11925.476821, best rearrangement setting 10
Bootstrap[66]: Time 5.478665 seconds, bootstrap likelihood -11410.105860, best rearrangement setting 5
Bootstrap[67]: Time 6.162318 seconds, bootstrap likelihood -11185.835650, best rearrangement setting 7
Bootstrap[68]: Time 5.361421 seconds, bootstrap likelihood -11610.981400, best rearrangement setting 5
Bootstrap[69]: Time 7.173078 seconds, bootstrap likelihood -11879.161674, best rearrangement setting 11
Bootstrap[70]: Time 5.103745 seconds, bootstrap likelihood -10892.415258, best rearrangement setting 5
Bootstrap[71]: Time 6.184954 seconds, bootstrap likelihood -11568.005936, best rearrangement setting 6
Bootstrap[72]: Time 6.099030 seconds, bootstrap likelihood -12281.898896, best rearrangement setting 10
Bootstrap[73]: Time 7.028853 seconds, bootstrap likelihood -12338.053311, best rearrangement setting 12
Bootstrap[74]: Time 5.682031 seconds, bootstrap likelihood -12287.098800, best rearrangement setting 15
Bootstrap[75]: Time 6.394760 seconds, bootstrap likelihood -12096.974775, best rearrangement setting 5
Bootstrap[76]: Time 6.214676 seconds, bootstrap likelihood -11844.396220, best rearrangement setting 13
Bootstrap[77]: Time 5.734461 seconds, bootstrap likelihood -11244.897237, best rearrangement setting 15
Bootstrap[78]: Time 6.282990 seconds, bootstrap likelihood -11627.888752, best rearrangement setting 5
Bootstrap[79]: Time 5.885751 seconds, bootstrap likelihood -11914.968751, best rearrangement setting 6
Bootstrap[80]: Time 6.220682 seconds, bootstrap likelihood -11726.295618, best rearrangement setting 11
Bootstrap[81]: Time 6.422603 seconds, bootstrap likelihood -11135.606725, best rearrangement setting 10
Bootstrap[82]: Time 7.439814 seconds, bootstrap likelihood -11814.358429, best rearrangement setting 10
Bootstrap[83]: Time 5.790469 seconds, bootstrap likelihood -11852.032470, best rearrangement setting 13
Bootstrap[84]: Time 5.960518 seconds, bootstrap likelihood -11533.620382, best rearrangement setting 7
Bootstrap[85]: Time 8.307308 seconds, bootstrap likelihood -12268.630647, best rearrangement setting 13
Bootstrap[86]: Time 6.176588 seconds, bootstrap likelihood -11393.210491, best rearrangement setting 6
Bootstrap[87]: Time 5.513528 seconds, bootstrap likelihood -12011.764621, best rearrangement setting 8
Bootstrap[88]: Time 6.193797 seconds, bootstrap likelihood -11468.368518, best rearrangement setting 5
Bootstrap[89]: Time 5.745089 seconds, bootstrap likelihood -12434.159012, best rearrangement setting 12
Bootstrap[90]: Time 5.285111 seconds, bootstrap likelihood -11041.248543, best rearrangement setting 5
Bootstrap[91]: Time 7.596895 seconds, bootstrap likelihood -11271.589462, best rearrangement setting 11
Bootstrap[92]: Time 6.538553 seconds, bootstrap likelihood -11312.978315, best rearrangement setting 7
Bootstrap[93]: Time 5.737546 seconds, bootstrap likelihood -11370.549948, best rearrangement setting 12
Bootstrap[94]: Time 5.960908 seconds, bootstrap likelihood -11234.965014, best rearrangement setting 9
Bootstrap[95]: Time 6.055514 seconds, bootstrap likelihood -11659.483585, best rearrangement setting 14
Bootstrap[96]: Time 5.844512 seconds, bootstrap likelihood -11340.399737, best rearrangement setting 9
Bootstrap[97]: Time 6.586447 seconds, bootstrap likelihood -11495.155971, best rearrangement setting 7
Bootstrap[98]: Time 6.086114 seconds, bootstrap likelihood -12038.047674, best rearrangement setting 11
Bootstrap[99]: Time 6.173774 seconds, bootstrap likelihood -11901.326639, best rearrangement setting 10
Bootstrap[100]: Time 5.835390 seconds, bootstrap likelihood -11836.490100, best rearrangement setting 13
Bootstrap[101]: Time 7.166388 seconds, bootstrap likelihood -11978.385436, best rearrangement setting 10
Bootstrap[102]: Time 5.511044 seconds, bootstrap likelihood -10969.577259, best rearrangement setting 5
Bootstrap[103]: Time 5.707779 seconds, bootstrap likelihood -10472.811851, best rearrangement setting 12
Bootstrap[104]: Time 5.969044 seconds, bootstrap likelihood -11406.243171, best rearrangement setting 11
Bootstrap[105]: Time 6.559501 seconds, bootstrap likelihood -11150.066950, best rearrangement setting 7
Bootstrap[106]: Time 5.568453 seconds, bootstrap likelihood -12628.005940, best rearrangement setting 6
Bootstrap[107]: Time 7.562304 seconds, bootstrap likelihood -12146.941098, best rearrangement setting 14
Bootstrap[108]: Time 6.019549 seconds, bootstrap likelihood -11606.596637, best rearrangement setting 7
Bootstrap[109]: Time 5.501481 seconds, bootstrap likelihood -11286.932756, best rearrangement setting 15
Bootstrap[110]: Time 5.977749 seconds, bootstrap likelihood -11728.942629, best rearrangement setting 14
Bootstrap[111]: Time 6.776594 seconds, bootstrap likelihood -11611.969791, best rearrangement setting 15
Bootstrap[112]: Time 6.300459 seconds, bootstrap likelihood -11719.645372, best rearrangement setting 13
Bootstrap[113]: Time 5.862996 seconds, bootstrap likelihood -11828.376119, best rearrangement setting 6
Bootstrap[114]: Time 7.056916 seconds, bootstrap likelihood -11678.434783, best rearrangement setting 8
Bootstrap[115]: Time 6.220072 seconds, bootstrap likelihood -11279.163388, best rearrangement setting 10
Bootstrap[116]: Time 6.175657 seconds, bootstrap likelihood -12044.037979, best rearrangement setting 5
Bootstrap[117]: Time 5.990399 seconds, bootstrap likelihood -12522.495636, best rearrangement setting 6
Bootstrap[118]: Time 5.846934 seconds, bootstrap likelihood -11619.870052, best rearrangement setting 7
Bootstrap[119]: Time 5.626810 seconds, bootstrap likelihood -12118.957063, best rearrangement setting 5
Bootstrap[120]: Time 6.189735 seconds, bootstrap likelihood -11316.191921, best rearrangement setting 10
Bootstrap[121]: Time 5.791471 seconds, bootstrap likelihood -10749.445623, best rearrangement setting 6
Bootstrap[122]: Time 6.075922 seconds, bootstrap likelihood -12167.233425, best rearrangement setting 9
Bootstrap[123]: Time 7.091087 seconds, bootstrap likelihood -11886.502662, best rearrangement setting 12
Bootstrap[124]: Time 6.672991 seconds, bootstrap likelihood -11575.291364, best rearrangement setting 10
Bootstrap[125]: Time 5.904648 seconds, bootstrap likelihood -11490.237799, best rearrangement setting 15
Bootstrap[126]: Time 6.412371 seconds, bootstrap likelihood -11717.774340, best rearrangement setting 15
Bootstrap[127]: Time 5.648348 seconds, bootstrap likelihood -11613.629483, best rearrangement setting 12
Bootstrap[128]: Time 6.087290 seconds, bootstrap likelihood -11081.601538, best rearrangement setting 5
Bootstrap[129]: Time 6.103071 seconds, bootstrap likelihood -11637.312294, best rearrangement setting 13
Bootstrap[130]: Time 5.963066 seconds, bootstrap likelihood -13049.334008, best rearrangement setting 8
Bootstrap[131]: Time 5.727612 seconds, bootstrap likelihood -12513.598428, best rearrangement setting 8
Bootstrap[132]: Time 6.476619 seconds, bootstrap likelihood -12535.836362, best rearrangement setting 7
Bootstrap[133]: Time 5.757566 seconds, bootstrap likelihood -12291.874970, best rearrangement setting 9
Bootstrap[134]: Time 6.014501 seconds, bootstrap likelihood -11638.705237, best rearrangement setting 13
Bootstrap[135]: Time 6.307433 seconds, bootstrap likelihood -11012.470060, best rearrangement setting 13
Bootstrap[136]: Time 5.467737 seconds, bootstrap likelihood -12334.335370, best rearrangement setting 6
Bootstrap[137]: Time 5.535056 seconds, bootstrap likelihood -10726.425386, best rearrangement setting 9
Bootstrap[138]: Time 6.716612 seconds, bootstrap likelihood -12257.855202, best rearrangement setting 13
Bootstrap[139]: Time 5.440268 seconds, bootstrap likelihood -11716.907900, best rearrangement setting 7
Bootstrap[140]: Time 6.757416 seconds, bootstrap likelihood -11532.875129, best rearrangement setting 14
Bootstrap[141]: Time 5.233469 seconds, bootstrap likelihood -11377.173792, best rearrangement setting 10
Bootstrap[142]: Time 5.773272 seconds, bootstrap likelihood -11544.130462, best rearrangement setting 7
Bootstrap[143]: Time 6.257462 seconds, bootstrap likelihood -11939.350940, best rearrangement setting 7
Bootstrap[144]: Time 7.169204 seconds, bootstrap likelihood -11825.162950, best rearrangement setting 12
Bootstrap[145]: Time 5.404552 seconds, bootstrap likelihood -11743.397112, best rearrangement setting 7
Bootstrap[146]: Time 6.051030 seconds, bootstrap likelihood -11246.613368, best rearrangement setting 10
Bootstrap[147]: Time 6.482412 seconds, bootstrap likelihood -11589.529520, best rearrangement setting 14
Bootstrap[148]: Time 7.087409 seconds, bootstrap likelihood -11588.662018, best rearrangement setting 11
Bootstrap[149]: Time 5.683079 seconds, bootstrap likelihood -11447.355707, best rearrangement setting 7
Bootstrap[150]: Time 6.435687 seconds, bootstrap likelihood -12621.236349, best rearrangement setting 7
Bootstrap[151]: Time 6.921132 seconds, bootstrap likelihood -11972.170912, best rearrangement setting 8
Bootstrap[152]: Time 5.618419 seconds, bootstrap likelihood -11300.821444, best rearrangement setting 5
Bootstrap[153]: Time 5.912440 seconds, bootstrap likelihood -11624.230267, best rearrangement setting 10
Bootstrap[154]: Time 6.025975 seconds, bootstrap likelihood -11770.368199, best rearrangement setting 10
Bootstrap[155]: Time 6.269043 seconds, bootstrap likelihood -11898.957539, best rearrangement setting 15
Bootstrap[156]: Time 5.490196 seconds, bootstrap likelihood -10947.589941, best rearrangement setting 6
Bootstrap[157]: Time 7.198555 seconds, bootstrap likelihood -10922.511380, best rearrangement setting 7
Bootstrap[158]: Time 6.505149 seconds, bootstrap likelihood -12048.485518, best rearrangement setting 8
Bootstrap[159]: Time 6.176889 seconds, bootstrap likelihood -11704.350930, best rearrangement setting 9
Bootstrap[160]: Time 6.655156 seconds, bootstrap likelihood -12176.251240, best rearrangement setting 6
Bootstrap[161]: Time 5.503069 seconds, bootstrap likelihood -11075.086673, best rearrangement setting 10
Bootstrap[162]: Time 5.718876 seconds, bootstrap likelihood -12264.353650, best rearrangement setting 12
Bootstrap[163]: Time 5.437704 seconds, bootstrap likelihood -11326.714544, best rearrangement setting 7
Bootstrap[164]: Time 5.884756 seconds, bootstrap likelihood -12420.213745, best rearrangement setting 12
Bootstrap[165]: Time 6.027778 seconds, bootstrap likelihood -11642.563798, best rearrangement setting 6
Bootstrap[166]: Time 6.438691 seconds, bootstrap likelihood -12040.726220, best rearrangement setting 13
Bootstrap[167]: Time 5.750390 seconds, bootstrap likelihood -11466.321445, best rearrangement setting 11
Bootstrap[168]: Time 5.672042 seconds, bootstrap likelihood -12042.798921, best rearrangement setting 13
Bootstrap[169]: Time 6.302021 seconds, bootstrap likelihood -11854.628278, best rearrangement setting 14
Bootstrap[170]: Time 5.345288 seconds, bootstrap likelihood -11660.551233, best rearrangement setting 11
Bootstrap[171]: Time 6.742866 seconds, bootstrap likelihood -11331.463705, best rearrangement setting 12
Bootstrap[172]: Time 5.845084 seconds, bootstrap likelihood -11880.094001, best rearrangement setting 7
Bootstrap[173]: Time 6.043367 seconds, bootstrap likelihood -11939.314849, best rearrangement setting 12
Bootstrap[174]: Time 6.145632 seconds, bootstrap likelihood -11457.187805, best rearrangement setting 6
Bootstrap[175]: Time 5.518618 seconds, bootstrap likelihood -11841.127104, best rearrangement setting 7
Bootstrap[176]: Time 5.650840 seconds, bootstrap likelihood -11506.709872, best rearrangement setting 6
Bootstrap[177]: Time 6.194531 seconds, bootstrap likelihood -11801.340586, best rearrangement setting 10
Bootstrap[178]: Time 4.756091 seconds, bootstrap likelihood -12254.540306, best rearrangement setting 5
Bootstrap[179]: Time 6.108992 seconds, bootstrap likelihood -11842.509464, best rearrangement setting 14
Bootstrap[180]: Time 6.274082 seconds, bootstrap likelihood -12067.204963, best rearrangement setting 13
Bootstrap[181]: Time 7.094127 seconds, bootstrap likelihood -11429.874044, best rearrangement setting 11
Bootstrap[182]: Time 5.665624 seconds, bootstrap likelihood -11846.290703, best rearrangement setting 8
Bootstrap[183]: Time 7.174169 seconds, bootstrap likelihood -11625.351635, best rearrangement setting 12
Bootstrap[184]: Time 5.839897 seconds, bootstrap likelihood -11428.577010, best rearrangement setting 14
Bootstrap[185]: Time 6.704473 seconds, bootstrap likelihood -11565.340423, best rearrangement setting 14
Bootstrap[186]: Time 5.924790 seconds, bootstrap likelihood -11878.880739, best rearrangement setting 11
Bootstrap[187]: Time 6.267927 seconds, bootstrap likelihood -11668.792029, best rearrangement setting 11
Bootstrap[188]: Time 6.438005 seconds, bootstrap likelihood -11906.174163, best rearrangement setting 7
Bootstrap[189]: Time 6.255191 seconds, bootstrap likelihood -11343.424282, best rearrangement setting 6
Bootstrap[190]: Time 6.077143 seconds, bootstrap likelihood -11060.868120, best rearrangement setting 6
Bootstrap[191]: Time 6.027696 seconds, bootstrap likelihood -11510.675202, best rearrangement setting 15
Bootstrap[192]: Time 5.907703 seconds, bootstrap likelihood -11614.955773, best rearrangement setting 6
Bootstrap[193]: Time 6.427040 seconds, bootstrap likelihood -10968.002297, best rearrangement setting 13
Bootstrap[194]: Time 5.841573 seconds, bootstrap likelihood -12023.154420, best rearrangement setting 9
Bootstrap[195]: Time 6.214649 seconds, bootstrap likelihood -11828.355404, best rearrangement setting 10
Bootstrap[196]: Time 6.067219 seconds, bootstrap likelihood -11722.146789, best rearrangement setting 10
Bootstrap[197]: Time 6.136364 seconds, bootstrap likelihood -11525.099056, best rearrangement setting 13
Bootstrap[198]: Time 6.008069 seconds, bootstrap likelihood -11718.327550, best rearrangement setting 5
Bootstrap[199]: Time 5.993450 seconds, bootstrap likelihood -11971.677234, best rearrangement setting 6
Bootstrap[200]: Time 7.219562 seconds, bootstrap likelihood -11087.496805, best rearrangement setting 15
Bootstrap[201]: Time 6.642165 seconds, bootstrap likelihood -11999.023195, best rearrangement setting 8
Bootstrap[202]: Time 5.874233 seconds, bootstrap likelihood -12070.085793, best rearrangement setting 10
Bootstrap[203]: Time 5.443525 seconds, bootstrap likelihood -11907.664229, best rearrangement setting 5
Bootstrap[204]: Time 5.993739 seconds, bootstrap likelihood -11501.362847, best rearrangement setting 5
Bootstrap[205]: Time 6.096604 seconds, bootstrap likelihood -12334.589858, best rearrangement setting 12
Bootstrap[206]: Time 6.739516 seconds, bootstrap likelihood -11956.012411, best rearrangement setting 9
Bootstrap[207]: Time 6.070334 seconds, bootstrap likelihood -11845.558590, best rearrangement setting 7
Bootstrap[208]: Time 5.965323 seconds, bootstrap likelihood -11728.044674, best rearrangement setting 14
Bootstrap[209]: Time 5.495133 seconds, bootstrap likelihood -12101.470498, best rearrangement setting 14
Bootstrap[210]: Time 5.600451 seconds, bootstrap likelihood -12731.452602, best rearrangement setting 5
Bootstrap[211]: Time 6.363101 seconds, bootstrap likelihood -10958.455868, best rearrangement setting 8
Bootstrap[212]: Time 6.296073 seconds, bootstrap likelihood -11622.665682, best rearrangement setting 9
Bootstrap[213]: Time 6.277914 seconds, bootstrap likelihood -12117.507237, best rearrangement setting 13
Bootstrap[214]: Time 5.824990 seconds, bootstrap likelihood -11471.724401, best rearrangement setting 13
Bootstrap[215]: Time 5.959361 seconds, bootstrap likelihood -12334.546646, best rearrangement setting 11
Bootstrap[216]: Time 5.444400 seconds, bootstrap likelihood -11856.318890, best rearrangement setting 13
Bootstrap[217]: Time 5.584866 seconds, bootstrap likelihood -11409.098431, best rearrangement setting 7
Bootstrap[218]: Time 6.515462 seconds, bootstrap likelihood -11256.063938, best rearrangement setting 5
Bootstrap[219]: Time 6.208412 seconds, bootstrap likelihood -12040.102329, best rearrangement setting 12
Bootstrap[220]: Time 6.109144 seconds, bootstrap likelihood -12118.634616, best rearrangement setting 14
Bootstrap[221]: Time 5.575273 seconds, bootstrap likelihood -11438.244279, best rearrangement setting 9
Bootstrap[222]: Time 5.957681 seconds, bootstrap likelihood -11637.783136, best rearrangement setting 12
Bootstrap[223]: Time 7.506505 seconds, bootstrap likelihood -11499.789465, best rearrangement setting 15
Bootstrap[224]: Time 6.632229 seconds, bootstrap likelihood -10857.467475, best rearrangement setting 6
Bootstrap[225]: Time 5.675562 seconds, bootstrap likelihood -11502.395533, best rearrangement setting 15
Bootstrap[226]: Time 5.532787 seconds, bootstrap likelihood -11955.918957, best rearrangement setting 14
Bootstrap[227]: Time 7.408722 seconds, bootstrap likelihood -11936.455225, best rearrangement setting 11
Bootstrap[228]: Time 5.049725 seconds, bootstrap likelihood -11475.170853, best rearrangement setting 6
Bootstrap[229]: Time 6.313415 seconds, bootstrap likelihood -11642.378619, best rearrangement setting 8
Bootstrap[230]: Time 5.832786 seconds, bootstrap likelihood -11772.340235, best rearrangement setting 15
Bootstrap[231]: Time 6.380114 seconds, bootstrap likelihood -11384.978642, best rearrangement setting 8
Bootstrap[232]: Time 5.801768 seconds, bootstrap likelihood -11583.284188, best rearrangement setting 5
Bootstrap[233]: Time 5.748376 seconds, bootstrap likelihood -11768.942956, best rearrangement setting 7
Bootstrap[234]: Time 5.648240 seconds, bootstrap likelihood -11310.771668, best rearrangement setting 8
Bootstrap[235]: Time 5.587110 seconds, bootstrap likelihood -11695.904392, best rearrangement setting 13
Bootstrap[236]: Time 7.059229 seconds, bootstrap likelihood -11780.415422, best rearrangement setting 14
Bootstrap[237]: Time 5.792491 seconds, bootstrap likelihood -12324.117560, best rearrangement setting 14
Bootstrap[238]: Time 5.397703 seconds, bootstrap likelihood -12139.773431, best rearrangement setting 5
Bootstrap[239]: Time 6.897061 seconds, bootstrap likelihood -11296.080197, best rearrangement setting 9
Bootstrap[240]: Time 7.155934 seconds, bootstrap likelihood -12223.419608, best rearrangement setting 13
Bootstrap[241]: Time 5.907814 seconds, bootstrap likelihood -12431.842674, best rearrangement setting 7
Bootstrap[242]: Time 7.193290 seconds, bootstrap likelihood -11727.191482, best rearrangement setting 10
Bootstrap[243]: Time 6.236773 seconds, bootstrap likelihood -11519.098448, best rearrangement setting 6
Bootstrap[244]: Time 5.733193 seconds, bootstrap likelihood -11051.560188, best rearrangement setting 9
Bootstrap[245]: Time 5.741496 seconds, bootstrap likelihood -11999.984729, best rearrangement setting 5
Bootstrap[246]: Time 6.649634 seconds, bootstrap likelihood -12259.326566, best rearrangement setting 12
Bootstrap[247]: Time 5.908528 seconds, bootstrap likelihood -11244.786225, best rearrangement setting 12
Bootstrap[248]: Time 6.521719 seconds, bootstrap likelihood -12255.073710, best rearrangement setting 13
Bootstrap[249]: Time 5.896974 seconds, bootstrap likelihood -11746.144107, best rearrangement setting 14
Bootstrap[250]: Time 5.722243 seconds, bootstrap likelihood -11375.341894, best rearrangement setting 6
Bootstrap[251]: Time 5.510981 seconds, bootstrap likelihood -11900.422610, best rearrangement setting 10
Bootstrap[252]: Time 5.618106 seconds, bootstrap likelihood -11649.997256, best rearrangement setting 7
Bootstrap[253]: Time 5.580332 seconds, bootstrap likelihood -11494.695443, best rearrangement setting 13
Bootstrap[254]: Time 6.658913 seconds, bootstrap likelihood -11797.557797, best rearrangement setting 9
Bootstrap[255]: Time 5.699791 seconds, bootstrap likelihood -11269.231729, best rearrangement setting 7
Bootstrap[256]: Time 6.398426 seconds, bootstrap likelihood -12005.171851, best rearrangement setting 10
Bootstrap[257]: Time 5.753327 seconds, bootstrap likelihood -11352.550723, best rearrangement setting 9
Bootstrap[258]: Time 5.826537 seconds, bootstrap likelihood -12305.741691, best rearrangement setting 14
Bootstrap[259]: Time 5.591311 seconds, bootstrap likelihood -11975.933226, best rearrangement setting 15
Bootstrap[260]: Time 5.735382 seconds, bootstrap likelihood -12197.316643, best rearrangement setting 15
Bootstrap[261]: Time 5.433235 seconds, bootstrap likelihood -11263.011568, best rearrangement setting 11
Bootstrap[262]: Time 5.914482 seconds, bootstrap likelihood -10823.012023, best rearrangement setting 10
Bootstrap[263]: Time 5.552277 seconds, bootstrap likelihood -11638.909730, best rearrangement setting 8
Bootstrap[264]: Time 6.216391 seconds, bootstrap likelihood -11473.765864, best rearrangement setting 13
Bootstrap[265]: Time 6.510230 seconds, bootstrap likelihood -11708.976886, best rearrangement setting 8
Bootstrap[266]: Time 6.127690 seconds, bootstrap likelihood -11725.681946, best rearrangement setting 14
Bootstrap[267]: Time 6.215931 seconds, bootstrap likelihood -12067.359573, best rearrangement setting 12
Bootstrap[268]: Time 5.800259 seconds, bootstrap likelihood -11517.811411, best rearrangement setting 8
Bootstrap[269]: Time 6.053393 seconds, bootstrap likelihood -11548.709744, best rearrangement setting 9
Bootstrap[270]: Time 5.660856 seconds, bootstrap likelihood -11301.640144, best rearrangement setting 5
Bootstrap[271]: Time 5.315922 seconds, bootstrap likelihood -11923.041879, best rearrangement setting 7
Bootstrap[272]: Time 5.944902 seconds, bootstrap likelihood -11705.848096, best rearrangement setting 9
Bootstrap[273]: Time 5.574089 seconds, bootstrap likelihood -11586.517106, best rearrangement setting 8
Bootstrap[274]: Time 5.980817 seconds, bootstrap likelihood -11986.146636, best rearrangement setting 10
Bootstrap[275]: Time 5.482212 seconds, bootstrap likelihood -11402.546459, best rearrangement setting 8
Bootstrap[276]: Time 5.568736 seconds, bootstrap likelihood -11902.683094, best rearrangement setting 11
Bootstrap[277]: Time 5.530241 seconds, bootstrap likelihood -12150.414856, best rearrangement setting 6
Bootstrap[278]: Time 5.327366 seconds, bootstrap likelihood -11218.561409, best rearrangement setting 9
Bootstrap[279]: Time 6.125851 seconds, bootstrap likelihood -11679.324780, best rearrangement setting 9
Bootstrap[280]: Time 5.277072 seconds, bootstrap likelihood -10936.961535, best rearrangement setting 5
Bootstrap[281]: Time 6.867019 seconds, bootstrap likelihood -11086.072772, best rearrangement setting 12
Bootstrap[282]: Time 5.210159 seconds, bootstrap likelihood -11153.760943, best rearrangement setting 8
Bootstrap[283]: Time 5.174529 seconds, bootstrap likelihood -12389.178592, best rearrangement setting 6
Bootstrap[284]: Time 5.653045 seconds, bootstrap likelihood -11735.532664, best rearrangement setting 10
Bootstrap[285]: Time 6.290047 seconds, bootstrap likelihood -12149.084538, best rearrangement setting 5
Bootstrap[286]: Time 6.898712 seconds, bootstrap likelihood -11406.387149, best rearrangement setting 14
Bootstrap[287]: Time 7.011288 seconds, bootstrap likelihood -11620.783868, best rearrangement setting 11
Bootstrap[288]: Time 5.164393 seconds, bootstrap likelihood -11112.267979, best rearrangement setting 9
Bootstrap[289]: Time 6.100434 seconds, bootstrap likelihood -10747.416282, best rearrangement setting 10
Bootstrap[290]: Time 6.975695 seconds, bootstrap likelihood -11885.765626, best rearrangement setting 13
Bootstrap[291]: Time 6.026988 seconds, bootstrap likelihood -11376.931875, best rearrangement setting 15
Bootstrap[292]: Time 6.737231 seconds, bootstrap likelihood -12160.358795, best rearrangement setting 8
Bootstrap[293]: Time 6.109830 seconds, bootstrap likelihood -12135.031390, best rearrangement setting 12
Bootstrap[294]: Time 5.794730 seconds, bootstrap likelihood -11763.116308, best rearrangement setting 6
Bootstrap[295]: Time 7.281404 seconds, bootstrap likelihood -12735.451785, best rearrangement setting 6
Bootstrap[296]: Time 6.424436 seconds, bootstrap likelihood -10944.239011, best rearrangement setting 11
Bootstrap[297]: Time 5.569811 seconds, bootstrap likelihood -11691.553454, best rearrangement setting 5
Bootstrap[298]: Time 5.539056 seconds, bootstrap likelihood -11423.109346, best rearrangement setting 15
Bootstrap[299]: Time 5.409018 seconds, bootstrap likelihood -11984.072360, best rearrangement setting 8
Bootstrap[300]: Time 5.968756 seconds, bootstrap likelihood -11278.950577, best rearrangement setting 6
Bootstrap[301]: Time 5.544271 seconds, bootstrap likelihood -11477.762058, best rearrangement setting 11
Bootstrap[302]: Time 5.463561 seconds, bootstrap likelihood -12022.164676, best rearrangement setting 8
Bootstrap[303]: Time 5.850042 seconds, bootstrap likelihood -12322.554377, best rearrangement setting 14
Bootstrap[304]: Time 7.139686 seconds, bootstrap likelihood -12821.816729, best rearrangement setting 12
Bootstrap[305]: Time 5.399725 seconds, bootstrap likelihood -11400.905662, best rearrangement setting 6
Bootstrap[306]: Time 5.768452 seconds, bootstrap likelihood -10559.628702, best rearrangement setting 7
Bootstrap[307]: Time 6.336270 seconds, bootstrap likelihood -11932.627218, best rearrangement setting 13
Bootstrap[308]: Time 5.787507 seconds, bootstrap likelihood -12089.645447, best rearrangement setting 15
Bootstrap[309]: Time 6.378079 seconds, bootstrap likelihood -11909.114176, best rearrangement setting 8
Bootstrap[310]: Time 6.424244 seconds, bootstrap likelihood -12384.506552, best rearrangement setting 15
Bootstrap[311]: Time 7.095821 seconds, bootstrap likelihood -11743.992183, best rearrangement setting 8
Bootstrap[312]: Time 6.358502 seconds, bootstrap likelihood -11727.752114, best rearrangement setting 9
Bootstrap[313]: Time 5.424992 seconds, bootstrap likelihood -12227.907883, best rearrangement setting 5
Bootstrap[314]: Time 6.756263 seconds, bootstrap likelihood -11100.935584, best rearrangement setting 13
Bootstrap[315]: Time 6.170961 seconds, bootstrap likelihood -11504.677117, best rearrangement setting 13
Bootstrap[316]: Time 6.201021 seconds, bootstrap likelihood -11981.781370, best rearrangement setting 13
Bootstrap[317]: Time 6.503504 seconds, bootstrap likelihood -11292.874758, best rearrangement setting 14
Bootstrap[318]: Time 5.648037 seconds, bootstrap likelihood -12149.620560, best rearrangement setting 9
Bootstrap[319]: Time 6.338526 seconds, bootstrap likelihood -11525.373721, best rearrangement setting 14
Bootstrap[320]: Time 6.494167 seconds, bootstrap likelihood -11602.841318, best rearrangement setting 7
Bootstrap[321]: Time 6.197846 seconds, bootstrap likelihood -11885.837398, best rearrangement setting 9
Bootstrap[322]: Time 5.612389 seconds, bootstrap likelihood -12283.784770, best rearrangement setting 7
Bootstrap[323]: Time 5.645765 seconds, bootstrap likelihood -11654.046211, best rearrangement setting 5
Bootstrap[324]: Time 5.752653 seconds, bootstrap likelihood -11613.841654, best rearrangement setting 11
Bootstrap[325]: Time 5.850358 seconds, bootstrap likelihood -11897.055502, best rearrangement setting 11
Bootstrap[326]: Time 7.066227 seconds, bootstrap likelihood -11418.695750, best rearrangement setting 12
Bootstrap[327]: Time 5.866585 seconds, bootstrap likelihood -11087.313880, best rearrangement setting 14
Bootstrap[328]: Time 6.281085 seconds, bootstrap likelihood -11770.329381, best rearrangement setting 14
Bootstrap[329]: Time 5.741713 seconds, bootstrap likelihood -11205.713077, best rearrangement setting 6
Bootstrap[330]: Time 5.862911 seconds, bootstrap likelihood -11831.366149, best rearrangement setting 8
Bootstrap[331]: Time 6.038492 seconds, bootstrap likelihood -11637.200696, best rearrangement setting 10
Bootstrap[332]: Time 6.228420 seconds, bootstrap likelihood -11950.113264, best rearrangement setting 14
Bootstrap[333]: Time 5.544297 seconds, bootstrap likelihood -11846.284991, best rearrangement setting 10
Bootstrap[334]: Time 6.061359 seconds, bootstrap likelihood -11329.167279, best rearrangement setting 13
Bootstrap[335]: Time 5.810344 seconds, bootstrap likelihood -12009.903381, best rearrangement setting 12
Bootstrap[336]: Time 5.611557 seconds, bootstrap likelihood -12185.569019, best rearrangement setting 7
Bootstrap[337]: Time 5.685442 seconds, bootstrap likelihood -11850.433799, best rearrangement setting 9
Bootstrap[338]: Time 6.131965 seconds, bootstrap likelihood -11123.248349, best rearrangement setting 12
Bootstrap[339]: Time 6.657144 seconds, bootstrap likelihood -12260.164954, best rearrangement setting 9
Bootstrap[340]: Time 6.095740 seconds, bootstrap likelihood -11146.067695, best rearrangement setting 8
Bootstrap[341]: Time 5.276541 seconds, bootstrap likelihood -11848.328527, best rearrangement setting 6
Bootstrap[342]: Time 7.265448 seconds, bootstrap likelihood -11708.517730, best rearrangement setting 12
Bootstrap[343]: Time 5.164458 seconds, bootstrap likelihood -11699.688647, best rearrangement setting 5
Bootstrap[344]: Time 5.444127 seconds, bootstrap likelihood -11846.242970, best rearrangement setting 5
Bootstrap[345]: Time 5.896177 seconds, bootstrap likelihood -11446.937237, best rearrangement setting 13
Bootstrap[346]: Time 6.615439 seconds, bootstrap likelihood -11489.561064, best rearrangement setting 14
Bootstrap[347]: Time 6.606852 seconds, bootstrap likelihood -11393.244702, best rearrangement setting 11
Bootstrap[348]: Time 5.615420 seconds, bootstrap likelihood -12128.367288, best rearrangement setting 6
Bootstrap[349]: Time 5.996844 seconds, bootstrap likelihood -11106.375640, best rearrangement setting 15
Bootstrap[350]: Time 7.080866 seconds, bootstrap likelihood -11748.351799, best rearrangement setting 11
Bootstrap[351]: Time 6.024639 seconds, bootstrap likelihood -11834.011506, best rearrangement setting 13
Bootstrap[352]: Time 6.174237 seconds, bootstrap likelihood -12002.843028, best rearrangement setting 5
Bootstrap[353]: Time 6.327686 seconds, bootstrap likelihood -11642.717210, best rearrangement setting 12
Bootstrap[354]: Time 6.597388 seconds, bootstrap likelihood -11334.440664, best rearrangement setting 14
Bootstrap[355]: Time 6.519373 seconds, bootstrap likelihood -10884.555477, best rearrangement setting 12
Bootstrap[356]: Time 5.566619 seconds, bootstrap likelihood -11403.529012, best rearrangement setting 7
Bootstrap[357]: Time 6.398994 seconds, bootstrap likelihood -11041.482101, best rearrangement setting 8
Bootstrap[358]: Time 6.188500 seconds, bootstrap likelihood -11526.261197, best rearrangement setting 14
Bootstrap[359]: Time 6.852739 seconds, bootstrap likelihood -11718.698992, best rearrangement setting 9
Bootstrap[360]: Time 5.959204 seconds, bootstrap likelihood -11318.596521, best rearrangement setting 7
Bootstrap[361]: Time 5.124584 seconds, bootstrap likelihood -11078.974547, best rearrangement setting 6
Bootstrap[362]: Time 6.737313 seconds, bootstrap likelihood -11712.303166, best rearrangement setting 15
Bootstrap[363]: Time 6.535267 seconds, bootstrap likelihood -11640.554822, best rearrangement setting 13
Bootstrap[364]: Time 5.418647 seconds, bootstrap likelihood -11852.408307, best rearrangement setting 7
Bootstrap[365]: Time 5.838344 seconds, bootstrap likelihood -11659.178850, best rearrangement setting 9
Bootstrap[366]: Time 6.018713 seconds, bootstrap likelihood -11664.744063, best rearrangement setting 9
Bootstrap[367]: Time 6.021169 seconds, bootstrap likelihood -12224.489519, best rearrangement setting 14
Bootstrap[368]: Time 5.768802 seconds, bootstrap likelihood -12134.531272, best rearrangement setting 15
Bootstrap[369]: Time 5.272402 seconds, bootstrap likelihood -12216.577710, best rearrangement setting 5
Bootstrap[370]: Time 6.365624 seconds, bootstrap likelihood -11392.276948, best rearrangement setting 14
Bootstrap[371]: Time 5.938471 seconds, bootstrap likelihood -12039.389357, best rearrangement setting 5
Bootstrap[372]: Time 5.948312 seconds, bootstrap likelihood -12254.955626, best rearrangement setting 11
Bootstrap[373]: Time 5.442491 seconds, bootstrap likelihood -12164.831143, best rearrangement setting 6
Bootstrap[374]: Time 7.257601 seconds, bootstrap likelihood -10848.001237, best rearrangement setting 12
Bootstrap[375]: Time 5.947124 seconds, bootstrap likelihood -11126.277083, best rearrangement setting 15
Bootstrap[376]: Time 5.938795 seconds, bootstrap likelihood -11680.898248, best rearrangement setting 13
Bootstrap[377]: Time 5.584308 seconds, bootstrap likelihood -12835.362189, best rearrangement setting 6
Bootstrap[378]: Time 6.119559 seconds, bootstrap likelihood -11223.538873, best rearrangement setting 14
Bootstrap[379]: Time 6.033620 seconds, bootstrap likelihood -11902.675692, best rearrangement setting 13
Bootstrap[380]: Time 5.983488 seconds, bootstrap likelihood -12782.097063, best rearrangement setting 13
Bootstrap[381]: Time 5.453193 seconds, bootstrap likelihood -11182.268234, best rearrangement setting 5
Bootstrap[382]: Time 6.503499 seconds, bootstrap likelihood -12010.066813, best rearrangement setting 12
Bootstrap[383]: Time 5.899360 seconds, bootstrap likelihood -11684.165582, best rearrangement setting 6
Bootstrap[384]: Time 5.484077 seconds, bootstrap likelihood -11059.463805, best rearrangement setting 7
Bootstrap[385]: Time 6.108084 seconds, bootstrap likelihood -10776.866148, best rearrangement setting 12
Bootstrap[386]: Time 5.640597 seconds, bootstrap likelihood -11612.848594, best rearrangement setting 6
Bootstrap[387]: Time 5.668415 seconds, bootstrap likelihood -12052.956809, best rearrangement setting 6
Bootstrap[388]: Time 5.709082 seconds, bootstrap likelihood -11533.006329, best rearrangement setting 11
Bootstrap[389]: Time 5.780381 seconds, bootstrap likelihood -12433.802334, best rearrangement setting 12
Bootstrap[390]: Time 5.091693 seconds, bootstrap likelihood -12073.891214, best rearrangement setting 7
Bootstrap[391]: Time 5.819652 seconds, bootstrap likelihood -12305.875899, best rearrangement setting 15
Bootstrap[392]: Time 6.234048 seconds, bootstrap likelihood -11880.561381, best rearrangement setting 7
Bootstrap[393]: Time 5.719892 seconds, bootstrap likelihood -11319.943200, best rearrangement setting 12
Bootstrap[394]: Time 6.384437 seconds, bootstrap likelihood -11790.503742, best rearrangement setting 10
Bootstrap[395]: Time 7.346654 seconds, bootstrap likelihood -11395.462220, best rearrangement setting 13
Bootstrap[396]: Time 6.168725 seconds, bootstrap likelihood -12233.674461, best rearrangement setting 13
Bootstrap[397]: Time 6.352228 seconds, bootstrap likelihood -12263.933540, best rearrangement setting 12
Bootstrap[398]: Time 5.425664 seconds, bootstrap likelihood -11444.369970, best rearrangement setting 6
Bootstrap[399]: Time 5.756942 seconds, bootstrap likelihood -11752.229412, best rearrangement setting 14
Bootstrap[400]: Time 6.114353 seconds, bootstrap likelihood -12191.853147, best rearrangement setting 9
Bootstrap[401]: Time 5.713364 seconds, bootstrap likelihood -12095.200748, best rearrangement setting 14
Bootstrap[402]: Time 7.798128 seconds, bootstrap likelihood -11023.679806, best rearrangement setting 14
Bootstrap[403]: Time 7.100053 seconds, bootstrap likelihood -11271.767373, best rearrangement setting 13
Bootstrap[404]: Time 6.607587 seconds, bootstrap likelihood -11341.716138, best rearrangement setting 11
Bootstrap[405]: Time 6.135791 seconds, bootstrap likelihood -11091.335678, best rearrangement setting 12
Bootstrap[406]: Time 6.344133 seconds, bootstrap likelihood -12390.101675, best rearrangement setting 7
Bootstrap[407]: Time 6.872825 seconds, bootstrap likelihood -11781.276600, best rearrangement setting 13
Bootstrap[408]: Time 7.194743 seconds, bootstrap likelihood -12148.903925, best rearrangement setting 13
Bootstrap[409]: Time 5.409301 seconds, bootstrap likelihood -12072.252121, best rearrangement setting 7
Bootstrap[410]: Time 6.106353 seconds, bootstrap likelihood -12218.379191, best rearrangement setting 7
Bootstrap[411]: Time 5.512357 seconds, bootstrap likelihood -11845.861520, best rearrangement setting 9
Bootstrap[412]: Time 7.614729 seconds, bootstrap likelihood -12059.867204, best rearrangement setting 14
Bootstrap[413]: Time 6.490416 seconds, bootstrap likelihood -11955.371074, best rearrangement setting 15
Bootstrap[414]: Time 6.066042 seconds, bootstrap likelihood -10827.625668, best rearrangement setting 8
Bootstrap[415]: Time 5.611433 seconds, bootstrap likelihood -11626.754888, best rearrangement setting 13
Bootstrap[416]: Time 5.698997 seconds, bootstrap likelihood -11064.276864, best rearrangement setting 5
Bootstrap[417]: Time 6.859452 seconds, bootstrap likelihood -11330.880169, best rearrangement setting 11
Bootstrap[418]: Time 6.135924 seconds, bootstrap likelihood -11956.614554, best rearrangement setting 12
Bootstrap[419]: Time 5.819527 seconds, bootstrap likelihood -12017.833477, best rearrangement setting 15
Bootstrap[420]: Time 6.349961 seconds, bootstrap likelihood -11996.102806, best rearrangement setting 15
Bootstrap[421]: Time 6.352870 seconds, bootstrap likelihood -11069.112407, best rearrangement setting 13
Bootstrap[422]: Time 7.179109 seconds, bootstrap likelihood -11946.854039, best rearrangement setting 12
Bootstrap[423]: Time 6.037833 seconds, bootstrap likelihood -11421.827761, best rearrangement setting 9
Bootstrap[424]: Time 7.402788 seconds, bootstrap likelihood -12105.310873, best rearrangement setting 7
Bootstrap[425]: Time 5.919232 seconds, bootstrap likelihood -11835.514319, best rearrangement setting 8
Bootstrap[426]: Time 6.348919 seconds, bootstrap likelihood -11293.724687, best rearrangement setting 15
Bootstrap[427]: Time 5.849663 seconds, bootstrap likelihood -11665.417015, best rearrangement setting 8
Bootstrap[428]: Time 5.145319 seconds, bootstrap likelihood -11604.816999, best rearrangement setting 6
Bootstrap[429]: Time 6.107245 seconds, bootstrap likelihood -11254.037758, best rearrangement setting 9
Bootstrap[430]: Time 5.791729 seconds, bootstrap likelihood -11813.411606, best rearrangement setting 15
Bootstrap[431]: Time 5.899600 seconds, bootstrap likelihood -11191.354908, best rearrangement setting 13
Bootstrap[432]: Time 5.519077 seconds, bootstrap likelihood -11966.203179, best rearrangement setting 11
Bootstrap[433]: Time 5.505355 seconds, bootstrap likelihood -11668.832154, best rearrangement setting 13
Bootstrap[434]: Time 6.349947 seconds, bootstrap likelihood -11446.500690, best rearrangement setting 14
Bootstrap[435]: Time 6.590525 seconds, bootstrap likelihood -11470.747279, best rearrangement setting 8
Bootstrap[436]: Time 5.275791 seconds, bootstrap likelihood -11646.480960, best rearrangement setting 7
Bootstrap[437]: Time 5.931896 seconds, bootstrap likelihood -11932.295204, best rearrangement setting 8
Bootstrap[438]: Time 5.960397 seconds, bootstrap likelihood -11227.752508, best rearrangement setting 9
Bootstrap[439]: Time 5.275324 seconds, bootstrap likelihood -11782.817031, best rearrangement setting 15
Bootstrap[440]: Time 5.472938 seconds, bootstrap likelihood -12230.052102, best rearrangement setting 15
Bootstrap[441]: Time 5.737276 seconds, bootstrap likelihood -11683.436423, best rearrangement setting 5
Bootstrap[442]: Time 5.743004 seconds, bootstrap likelihood -11932.349720, best rearrangement setting 6
Bootstrap[443]: Time 5.405560 seconds, bootstrap likelihood -11494.841375, best rearrangement setting 12
Bootstrap[444]: Time 5.569368 seconds, bootstrap likelihood -11057.360561, best rearrangement setting 9
Bootstrap[445]: Time 5.569290 seconds, bootstrap likelihood -10945.478201, best rearrangement setting 8
Bootstrap[446]: Time 7.439592 seconds, bootstrap likelihood -12532.723729, best rearrangement setting 13
Bootstrap[447]: Time 7.420814 seconds, bootstrap likelihood -12495.145441, best rearrangement setting 9
Bootstrap[448]: Time 6.734778 seconds, bootstrap likelihood -11939.766279, best rearrangement setting 13
Bootstrap[449]: Time 7.491522 seconds, bootstrap likelihood -11795.284335, best rearrangement setting 14
Bootstrap[450]: Time 5.726853 seconds, bootstrap likelihood -11929.256938, best rearrangement setting 6
Bootstrap[451]: Time 6.016258 seconds, bootstrap likelihood -10585.574984, best rearrangement setting 10
Bootstrap[452]: Time 5.916329 seconds, bootstrap likelihood -11283.637777, best rearrangement setting 14
Bootstrap[453]: Time 6.209560 seconds, bootstrap likelihood -11642.964023, best rearrangement setting 11
Bootstrap[454]: Time 7.191762 seconds, bootstrap likelihood -11145.357476, best rearrangement setting 12
Bootstrap[455]: Time 6.014610 seconds, bootstrap likelihood -11410.890880, best rearrangement setting 14
Bootstrap[456]: Time 6.253353 seconds, bootstrap likelihood -11781.136712, best rearrangement setting 14
Bootstrap[457]: Time 6.465341 seconds, bootstrap likelihood -11854.157150, best rearrangement setting 12
Bootstrap[458]: Time 6.304478 seconds, bootstrap likelihood -12401.731943, best rearrangement setting 15
Bootstrap[459]: Time 6.699231 seconds, bootstrap likelihood -11990.702127, best rearrangement setting 15
Bootstrap[460]: Time 6.367763 seconds, bootstrap likelihood -11819.107183, best rearrangement setting 15
Bootstrap[461]: Time 6.000441 seconds, bootstrap likelihood -12018.292118, best rearrangement setting 13
Bootstrap[462]: Time 6.749785 seconds, bootstrap likelihood -11943.401929, best rearrangement setting 13
Bootstrap[463]: Time 5.478281 seconds, bootstrap likelihood -11384.421317, best rearrangement setting 5
Bootstrap[464]: Time 5.678245 seconds, bootstrap likelihood -12067.944372, best rearrangement setting 6
Bootstrap[465]: Time 7.178199 seconds, bootstrap likelihood -11929.539696, best rearrangement setting 10
Bootstrap[466]: Time 7.754928 seconds, bootstrap likelihood -11664.981247, best rearrangement setting 14
Bootstrap[467]: Time 6.520136 seconds, bootstrap likelihood -11670.196656, best rearrangement setting 12
Bootstrap[468]: Time 6.562309 seconds, bootstrap likelihood -10633.933948, best rearrangement setting 9
Bootstrap[469]: Time 6.372495 seconds, bootstrap likelihood -11327.191219, best rearrangement setting 10
Bootstrap[470]: Time 6.563142 seconds, bootstrap likelihood -11606.562817, best rearrangement setting 10
Bootstrap[471]: Time 5.072416 seconds, bootstrap likelihood -11921.871331, best rearrangement setting 5
Bootstrap[472]: Time 6.441955 seconds, bootstrap likelihood -11301.108932, best rearrangement setting 9
Bootstrap[473]: Time 5.149079 seconds, bootstrap likelihood -11841.290517, best rearrangement setting 14
Bootstrap[474]: Time 5.112596 seconds, bootstrap likelihood -11661.157664, best rearrangement setting 5
Bootstrap[475]: Time 6.334239 seconds, bootstrap likelihood -11389.793403, best rearrangement setting 13
Bootstrap[476]: Time 5.509626 seconds, bootstrap likelihood -11169.966773, best rearrangement setting 12
Bootstrap[477]: Time 6.969631 seconds, bootstrap likelihood -11563.951466, best rearrangement setting 14
Bootstrap[478]: Time 6.271777 seconds, bootstrap likelihood -11927.616637, best rearrangement setting 11
Bootstrap[479]: Time 5.920654 seconds, bootstrap likelihood -12616.670992, best rearrangement setting 14
Bootstrap[480]: Time 6.732142 seconds, bootstrap likelihood -11107.212259, best rearrangement setting 10
Bootstrap[481]: Time 5.865152 seconds, bootstrap likelihood -11509.666265, best rearrangement setting 14
Bootstrap[482]: Time 5.984599 seconds, bootstrap likelihood -11319.200154, best rearrangement setting 15
Bootstrap[483]: Time 6.353274 seconds, bootstrap likelihood -11687.974678, best rearrangement setting 7
Bootstrap[484]: Time 5.272131 seconds, bootstrap likelihood -11075.492537, best rearrangement setting 11
Bootstrap[485]: Time 5.676518 seconds, bootstrap likelihood -11852.681312, best rearrangement setting 5
Bootstrap[486]: Time 5.423415 seconds, bootstrap likelihood -12073.833160, best rearrangement setting 6
Bootstrap[487]: Time 5.674241 seconds, bootstrap likelihood -11824.604983, best rearrangement setting 9
Bootstrap[488]: Time 5.663255 seconds, bootstrap likelihood -11596.323680, best rearrangement setting 10
Bootstrap[489]: Time 5.507125 seconds, bootstrap likelihood -12130.476389, best rearrangement setting 8
Bootstrap[490]: Time 5.519678 seconds, bootstrap likelihood -11965.878043, best rearrangement setting 10
Bootstrap[491]: Time 5.744372 seconds, bootstrap likelihood -11737.837885, best rearrangement setting 8
Bootstrap[492]: Time 6.915172 seconds, bootstrap likelihood -11653.631834, best rearrangement setting 14
Bootstrap[493]: Time 6.393177 seconds, bootstrap likelihood -12150.314611, best rearrangement setting 6
Bootstrap[494]: Time 5.373758 seconds, bootstrap likelihood -11752.750417, best rearrangement setting 10
Bootstrap[495]: Time 5.700023 seconds, bootstrap likelihood -11213.107841, best rearrangement setting 15
Bootstrap[496]: Time 5.723463 seconds, bootstrap likelihood -11732.568402, best rearrangement setting 13
Bootstrap[497]: Time 4.961106 seconds, bootstrap likelihood -11603.874175, best rearrangement setting 5
Bootstrap[498]: Time 6.244017 seconds, bootstrap likelihood -11220.433148, best rearrangement setting 14
Bootstrap[499]: Time 5.981121 seconds, bootstrap likelihood -12009.883005, best rearrangement setting 13


Stopped Rapid BS search after 500 replicates with MRE-based Bootstopping criterion
WRF Average of 100 random splits: 2.437977
Overall Time for 500 Rapid Bootstraps 3061.086125 seconds
Average Time per Rapid Bootstrap 6.122172 seconds

Starting ML Search ...

Fast ML optimization finished

Fast ML search on Process 0: Time 688.902252 seconds

Slow ML Search 0 Likelihood: -13185.681056
Slow ML Search 1 Likelihood: -13184.311987
Slow ML Search 2 Likelihood: -13187.836429
Slow ML Search 3 Likelihood: -13184.468335
Slow ML Search 4 Likelihood: -13186.036633
Slow ML Search 5 Likelihood: -13186.457427
Slow ML Search 6 Likelihood: -13189.106150
Slow ML Search 7 Likelihood: -13186.017479
Slow ML Search 8 Likelihood: -13189.447105
Slow ML Search 9 Likelihood: -13186.184319
Slow ML optimization finished

Slow ML search on Process 0: Time 476.074257 seconds
Thorough ML search on Process 0: Time 97.894265 seconds

processID = 0, bestLH = -13182.586484

Final ML Optimization Likelihood: -13182.586484

Model Information:

Model Parameters of Partition 0, Name: No Name Provided, Type of Data: DNA
alpha: 0.270293
Tree-Length: 2.667153
rate A <-> C: 2.494003
rate A <-> G: 22.584820
rate A <-> T: 2.502704
rate C <-> G: 0.908669
rate C <-> T: 25.859546
rate G <-> T: 1.000000

freq pi(A): 0.299199
freq pi(C): 0.284487
freq pi(G): 0.122672
freq pi(T): 0.293642


ML search took 1262.872715 secs or 0.350798 hours

Combined Bootstrap and ML search took 4323.958897 secs or 1.201100 hours

Drawing Bootstrap Support Values on best-scoring ML tree ...



Found 1 tree in File RAxML_bestTree.Eliurus_spp_cytb_mtDNA_sequenced



Found 1 tree in File RAxML_bestTree.Eliurus_spp_cytb_mtDNA_sequenced

Program execution info written to RAxML_info.Eliurus_spp_cytb_mtDNA_sequenced
All 500 bootstrapped trees written to: RAxML_bootstrap.Eliurus_spp_cytb_mtDNA_sequenced

Best-scoring ML tree written to: RAxML_bestTree.Eliurus_spp_cytb_mtDNA_sequenced

Best-scoring ML tree with support values written to: RAxML_bipartitions.Eliurus_spp_cytb_mtDNA_sequenced

Best-scoring ML tree with support values as branch labels written to: RAxML_bipartitionsBranchLabels.Eliurus_spp_cytb_mtDNA_sequenced

Overall execution time for full ML analysis: 4324.157857 secs or 1.201155 hours or 0.050048 days